PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G110900.2

Common Name

B456_013G110900, LOC105783799

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CPP

Protein Properties

Length: 935aa MW: 101625 Da PI: 7.7487

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G110900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	44.2	3.8e-14	519	557	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkk+kClk+YC+Cfaag +C+e C+C++C+N+ e Gorai.013G110900.2 519 CKRCNCKKTKCLKLYCDCFAAGIYCAEPCSCQGCFNRPE 557 89**********************************876 PP
2	TCR	47.8	2.8e-15	605	643	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCk+s ClkkYCeC++a++ Cs C+Ce+CkN Gorai.013G110900.2 605 RHKRGCNCKRSMCLKKYCECYQANVGCSIGCRCEGCKNV 643 589***********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	4.1E-14	517	558	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	34.545	518	645	IPR005172	CRC domain
Pfam	PF03638	2.9E-11	520	555	IPR005172	CRC domain
SMART	SM01114	3.8E-17	605	646	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.2E-11	607	642	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 935 aa Download sequence Send to blast
MDSPKLSKSP IPSASASASA SISSSSSPVQ ESPFSNYISS LSPIKHDKAL HVAQGFVGLS 60 SPPLVFTSPR INTLGRPQSS SVKISQKGVG DKKIINESCI LERSVTESQE GLVTDIKNED 120 IKDDVAVQLG SSSECVDEYL ADPVETDCAK SAYSDKLNLK QSNNVLQSSV NGLLDLKNMK 180 FGRKNNVGRE VDAAQFLSGR SEESIERKLT SDEKLLKIED EQGSAQGISD GFQKFDSDRF 240 DLSSKEKECK NFGPQKDGHG DGCSNFLQQL PGSLPGVQSY EGFAKNIGGD ADAPVHSMTH 300 EASELQRSMS RRCLQFGEAQ PEATATCSIS TNRANNIISS TSLATNSETE SLSSSHLDLS 360 AKSRTRQLVN LSQLAMNMIP QCYGKSSLSV LKPSGIGLHL NSIVNAISMG QGGTASMKVA 420 QAIKSTSTTS CQSTENIDNC SDAFEKVSTP QGALEQKVCT IAGSASESLF AEESVEFHMT 480 PNIKRKFSSE DGDRNDMFDQ QRPIKKRKKL SNNTDGDCCK RCNCKKTKCL KLYCDCFAAG 540 IYCAEPCSCQ GCFNRPEYEE TVLETRKQIE SRNPLAFAPK IVQPVTEFPL SNREDGNRKT 600 PSSARHKRGC NCKRSMCLKK YCECYQANVG CSIGCRCEGC KNVYGKKEDY CVTKEMVNRS 660 GEISESRVAA KPKKEIFHSE LCDPYHLTPL TPLVQCSDHG KNASISRLFS RRCLPSPESD 720 LTVLSYAKSP RSPRTSDSND ILLETSKGNL DIDSFCEGIS YNNAVALADE FHCTPLPNHP 780 SVIIGSPSSK ARELTSLSRV QLDPRRRSLT PGGSLHWHSS PIMPMSPLND NKKLQGLDSA 840 DGGLYDILED DMPEILKDTS MPIKPVKAGS PNGKRVSPPH NLHQLGSSSS GPLRSGRKFI 900 LKAVPSFPPL TPCIDAKGIS NQSRNNFQEN RSND*

Sequence ? help Back to Top

Protein Sequence Length: 935 aa Download sequence Send to blast

MDSPKLSKSP IPSASASASA SISSSSSPVQ ESPFSNYISS LSPIKHDKAL HVAQGFVGLS  60
SPPLVFTSPR INTLGRPQSS SVKISQKGVG DKKIINESCI LERSVTESQE GLVTDIKNED  120
IKDDVAVQLG SSSECVDEYL ADPVETDCAK SAYSDKLNLK QSNNVLQSSV NGLLDLKNMK  180
FGRKNNVGRE VDAAQFLSGR SEESIERKLT SDEKLLKIED EQGSAQGISD GFQKFDSDRF  240
DLSSKEKECK NFGPQKDGHG DGCSNFLQQL PGSLPGVQSY EGFAKNIGGD ADAPVHSMTH  300
EASELQRSMS RRCLQFGEAQ PEATATCSIS TNRANNIISS TSLATNSETE SLSSSHLDLS  360
AKSRTRQLVN LSQLAMNMIP QCYGKSSLSV LKPSGIGLHL NSIVNAISMG QGGTASMKVA  420
QAIKSTSTTS CQSTENIDNC SDAFEKVSTP QGALEQKVCT IAGSASESLF AEESVEFHMT  480
PNIKRKFSSE DGDRNDMFDQ QRPIKKRKKL SNNTDGDCCK RCNCKKTKCL KLYCDCFAAG  540
IYCAEPCSCQ GCFNRPEYEE TVLETRKQIE SRNPLAFAPK IVQPVTEFPL SNREDGNRKT  600
PSSARHKRGC NCKRSMCLKK YCECYQANVG CSIGCRCEGC KNVYGKKEDY CVTKEMVNRS  660
GEISESRVAA KPKKEIFHSE LCDPYHLTPL TPLVQCSDHG KNASISRLFS RRCLPSPESD  720
LTVLSYAKSP RSPRTSDSND ILLETSKGNL DIDSFCEGIS YNNAVALADE FHCTPLPNHP  780
SVIIGSPSSK ARELTSLSRV QLDPRRRSLT PGGSLHWHSS PIMPMSPLND NKKLQGLDSA  840
DGGLYDILED DMPEILKDTS MPIKPVKAGS PNGKRVSPPH NLHQLGSSSS GPLRSGRKFI  900
LKAVPSFPPL TPCIDAKGIS NQSRNNFQEN RSND*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	3e-18	520	643	12	121	Protein lin-54 homolog
5fd3_B	3e-18	520	643	12	121	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	504	508	KKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ908232	4e-54	DQ908232.1 Gossypium hirsutum clone LIB5327-014-A1-N1-A9_Gh292 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012464902.1	0.0	PREDICTED: CRC domain-containing protein TSO1-like isoform X1
Refseq	XP_012464903.1	0.0	PREDICTED: CRC domain-containing protein TSO1-like isoform X1
TrEMBL	A0A0D2W4Y2	0.0	A0A0D2W4Y2_GOSRA; Uncharacterized protein
STRING	Gorai.013G110900.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	5e-47	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Gorai.013G110900.2
Entrez Gene	105783799

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]