PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G104500.2

Common Name

B456_013G104500, LOC105782956

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 332aa MW: 36909.9 Da PI: 9.8345

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G104500.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.6	1.9e-31	266	324	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p+++++tYegeHnh+k Gorai.013G104500.2 266 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHPK 324 99*********************9988**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	5.1E-18	217	262	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	9.7E-34	252	324	IPR003657	WRKY domain
PROSITE profile	PS50811	29.998	259	325	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-27	262	324	IPR003657	WRKY domain
SMART	SM00774	1.4E-38	264	324	IPR003657	WRKY domain
Pfam	PF03106	2.7E-27	266	323	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MEEVEEANKA AVESCHRVLS LLSQPQDQVH YRNLMAETGE AVFKFKRVVS LLNSSLGHAR 60 VRKLRKLQTP FPQSIFLDYQ RHNPTDYPSK DLQLGYHQEL SSHAKSSLYL GTPCLELSSN 120 GKNPLPLAQQ PPPPAHYHFL HQRGLQLQQH QAEMLSRKSN CGINFNFDSS SCTPTMSSTR 180 SFISSLSIDG SVANMDSGNA FHLIGAPRSS DQGSQHKKKC SGKGEDGSVK CGSSGKCHCS 240 KKRKQRVKRS IKVPAISTKL ADIPPDDYSW RKYGQKPIKG SPHPRGYYKC SSMRGCPARK 300 HVERCLEEPS MLIVTYEGEH NHPKLPSQAT T*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-20	260	326	10	75	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00284	DAP	Transfer from AT2G30590	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669800	0.0	KF669800.1 Gossypium hirsutum WRKY transcription factor 111 (WRKY111) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012463532.1	0.0	PREDICTED: probable WRKY transcription factor 21
Swissprot	O04336	1e-132	WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBL	A0A0D2VDD2	0.0	A0A0D2VDD2_GOSRA; Uncharacterized protein
STRING	Gorai.013G104500.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	1e-89	WRKY DNA-binding protein 21

Link Out ? help Back to Top
Phytozome	Gorai.013G104500.2
Entrez Gene	105782956

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]