PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G100200.3
Common NameB456_013G100200, LOC105783117
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 756aa    MW: 82339.1 Da    PI: 5.751
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G100200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.3e-2084139156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  Gorai.013G100200.3  84 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMK 139
                         688999***********************************************999 PP
2START2183.1e-682674871206
                         HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
               START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                         ela +a++elv++a+ +ep+W++s       +n++e++++f+++ +     ++ ea+r+++vv+m++ +lve+l+d++ qW++ +     k
  Gorai.013G100200.3 267 ELAVAAMEELVRMAQMGEPLWMTSLdgttYVLNEEEYIRTFPRGIGpkptgFKCEASRETAVVIMNHINLVEILMDVN-QWSTVFSgivsK 356
                         57899********************9888889***********999********************************.************ PP

                         EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS
               START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162
                         a+tl+v+s+g      galq+m +e+q++splvp R++++vRy++q+ +g+w++vdvS+d+ ++ p+    +R++++pSg+li++++ng+s
  Gorai.013G100200.3 357 ASTLDVLSTGiagnynGALQVMATEFQVPSPLVPtRESYYVRYCKQHAEGTWAVVDVSLDNIRPSPT----ARCRRRPSGCLIQEMPNGYS 443
                         ****************************************************************996....******************** PP

                         EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         kvtwvehv+++++ +h+l+++lv++g+a+ga++w atl+rqce+
  Gorai.013G100200.3 444 KVTWVEHVEVDDSGVHSLYKQLVSTGHAFGAQRWIATLDRQCER 487
                         ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-2263139IPR009057Homeodomain-like
SuperFamilySSF466895.01E-1972141IPR009057Homeodomain-like
PROSITE profilePS5007116.68281141IPR001356Homeobox domain
SMARTSM003894.0E-1982145IPR001356Homeobox domain
PfamPF000461.2E-1784139IPR001356Homeobox domain
CDDcd000861.57E-1884142No hitNo description
PROSITE profilePS5084844.672258490IPR002913START domain
SuperFamilySSF559612.13E-35260489No hitNo description
CDDcd088751.22E-130262486No hitNo description
SMARTSM002344.8E-62267487IPR002913START domain
PfamPF018521.6E-57268487IPR002913START domain
Gene3DG3DSA:3.30.530.201.6E-5363464IPR023393START-like domain
SuperFamilySSF559612.27E-24507747No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MLAGVMIPAR NMPTMISGNG NVSGFGTSLL VQPSNMMEGQ LHPLESESEI GRMRDDELDS  60
TTKSGSENHE AASGDDQNPR PNKKKRYHRH TQHQIQEMEA FFKECPHPDD KQRKELGREL  120
GLEPLQVKFW FQNKRTQMKT QHERHENTQL RTENEKLRAD NMRYREALST ASCPNCGGPT  180
AVGQMSFDEH HLRLENARLR EEIDRISAIA AKYVGKPVVS YPLLSSPMTP RPFEFGAQPG  240
TGDMYGAGDL LRSISSPSEA DKPIIIELAV AAMEELVRMA QMGEPLWMTS LDGTTYVLNE  300
EEYIRTFPRG IGPKPTGFKC EASRETAVVI MNHINLVEIL MDVNQWSTVF SGIVSKASTL  360
DVLSTGIAGN YNGALQVMAT EFQVPSPLVP TRESYYVRYC KQHAEGTWAV VDVSLDNIRP  420
SPTARCRRRP SGCLIQEMPN GYSKVTWVEH VEVDDSGVHS LYKQLVSTGH AFGAQRWIAT  480
LDRQCERLAS VMATNVPTGD VGVITNQDGR KSMLKLAERM VMSFCAGVSA STAHTWTTLS  540
GTGADDVRVM TRKSVDDPGR PPGIVLSAAT SFWLPVSPKR VFDFLRDENS RSEWDILSNG  600
GVVQEMAHIA NGRDTGNCVS LLRVNSANSS QSNMLILQES CTDPTASFVI YAPVDIVAMN  660
VVLNGGDPDY VALLPSGFAI LPDGSTITAT TSSAGGGIDT DAAGSSSGSL LTVAFQILVD  720
SVPTAKLSLG SVATVNNLIA CTVERIKASL SCENA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463790.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
RefseqXP_012463791.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A0D2W4M40.0A0A0D2W4M4_GOSRA; Uncharacterized protein
STRINGGorai.013G100200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]