PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G100200.2 | ||||||||
Common Name | B456_013G100200, LOC105783117 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 756aa MW: 82339.1 Da PI: 5.751 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.7 | 5.3e-20 | 84 | 139 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+ qVk+WFqN+R+++k Gorai.013G100200.2 84 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMK 139 688999***********************************************999 PP | |||||||
2 | START | 218 | 3.1e-68 | 267 | 487 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 ela +a++elv++a+ +ep+W++s +n++e++++f+++ + ++ ea+r+++vv+m++ +lve+l+d++ qW++ + k Gorai.013G100200.2 267 ELAVAAMEELVRMAQMGEPLWMTSLdgttYVLNEEEYIRTFPRGIGpkptgFKCEASRETAVVIMNHINLVEILMDVN-QWSTVFSgivsK 356 57899********************9888889***********999********************************.************ PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 a+tl+v+s+g galq+m +e+q++splvp R++++vRy++q+ +g+w++vdvS+d+ ++ p+ +R++++pSg+li++++ng+s Gorai.013G100200.2 357 ASTLDVLSTGiagnynGALQVMATEFQVPSPLVPtRESYYVRYCKQHAEGTWAVVDVSLDNIRPSPT----ARCRRRPSGCLIQEMPNGYS 443 ****************************************************************996....******************** PP EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 kvtwvehv+++++ +h+l+++lv++g+a+ga++w atl+rqce+ Gorai.013G100200.2 444 KVTWVEHVEVDDSGVHSLYKQLVSTGHAFGAQRWIATLDRQCER 487 ******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-22 | 63 | 139 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.01E-19 | 72 | 141 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.682 | 81 | 141 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.0E-19 | 82 | 145 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.2E-17 | 84 | 139 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.57E-18 | 84 | 142 | No hit | No description |
PROSITE profile | PS50848 | 44.672 | 258 | 490 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.13E-35 | 260 | 489 | No hit | No description |
CDD | cd08875 | 1.22E-130 | 262 | 486 | No hit | No description |
SMART | SM00234 | 4.8E-62 | 267 | 487 | IPR002913 | START domain |
Pfam | PF01852 | 1.6E-57 | 268 | 487 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.6E-5 | 363 | 464 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.27E-24 | 507 | 747 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 756 aa Download sequence Send to blast |
MLAGVMIPAR NMPTMISGNG NVSGFGTSLL VQPSNMMEGQ LHPLESESEI GRMRDDELDS 60 TTKSGSENHE AASGDDQNPR PNKKKRYHRH TQHQIQEMEA FFKECPHPDD KQRKELGREL 120 GLEPLQVKFW FQNKRTQMKT QHERHENTQL RTENEKLRAD NMRYREALST ASCPNCGGPT 180 AVGQMSFDEH HLRLENARLR EEIDRISAIA AKYVGKPVVS YPLLSSPMTP RPFEFGAQPG 240 TGDMYGAGDL LRSISSPSEA DKPIIIELAV AAMEELVRMA QMGEPLWMTS LDGTTYVLNE 300 EEYIRTFPRG IGPKPTGFKC EASRETAVVI MNHINLVEIL MDVNQWSTVF SGIVSKASTL 360 DVLSTGIAGN YNGALQVMAT EFQVPSPLVP TRESYYVRYC KQHAEGTWAV VDVSLDNIRP 420 SPTARCRRRP SGCLIQEMPN GYSKVTWVEH VEVDDSGVHS LYKQLVSTGH AFGAQRWIAT 480 LDRQCERLAS VMATNVPTGD VGVITNQDGR KSMLKLAERM VMSFCAGVSA STAHTWTTLS 540 GTGADDVRVM TRKSVDDPGR PPGIVLSAAT SFWLPVSPKR VFDFLRDENS RSEWDILSNG 600 GVVQEMAHIA NGRDTGNCVS LLRVNSANSS QSNMLILQES CTDPTASFVI YAPVDIVAMN 660 VVLNGGDPDY VALLPSGFAI LPDGSTITAT TSSAGGGIDT DAAGSSSGSL LTVAFQILVD 720 SVPTAKLSLG SVATVNNLIA CTVERIKASL SCENA* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012463790.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1 | ||||
Refseq | XP_012463791.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1 | ||||
Swissprot | Q94C37 | 0.0 | HDG2_ARATH; Homeobox-leucine zipper protein HDG2 | ||||
TrEMBL | A0A0D2W4M4 | 0.0 | A0A0D2W4M4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G100200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM491 | 28 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G100200.2 |
Entrez Gene | 105783117 |
Publications ? help Back to Top | |||
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