PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G100200.1
Common NameB456_013G100200, LOC105783117
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 728aa    MW: 79626.9 Da    PI: 5.6366
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G100200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85e-2056111156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  Gorai.013G100200.1  56 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMK 111
                         688999***********************************************999 PP
2START218.12.9e-682394591206
                         HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
               START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                         ela +a++elv++a+ +ep+W++s       +n++e++++f+++ +     ++ ea+r+++vv+m++ +lve+l+d++ qW++ +     k
  Gorai.013G100200.1 239 ELAVAAMEELVRMAQMGEPLWMTSLdgttYVLNEEEYIRTFPRGIGpkptgFKCEASRETAVVIMNHINLVEILMDVN-QWSTVFSgivsK 328
                         57899********************9888889***********999********************************.************ PP

                         EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS
               START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162
                         a+tl+v+s+g      galq+m +e+q++splvp R++++vRy++q+ +g+w++vdvS+d+ ++ p+    +R++++pSg+li++++ng+s
  Gorai.013G100200.1 329 ASTLDVLSTGiagnynGALQVMATEFQVPSPLVPtRESYYVRYCKQHAEGTWAVVDVSLDNIRPSPT----ARCRRRPSGCLIQEMPNGYS 415
                         ****************************************************************996....******************** PP

                         EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         kvtwvehv+++++ +h+l+++lv++g+a+ga++w atl+rqce+
  Gorai.013G100200.1 416 KVTWVEHVEVDDSGVHSLYKQLVSTGHAFGAQRWIATLDRQCER 459
                         ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-2235111IPR009057Homeodomain-like
SuperFamilySSF466895.01E-1944113IPR009057Homeodomain-like
PROSITE profilePS5007116.68253113IPR001356Homeobox domain
SMARTSM003894.0E-1954117IPR001356Homeobox domain
PfamPF000461.1E-1756111IPR001356Homeobox domain
CDDcd000861.46E-1856114No hitNo description
PROSITE profilePS5084844.672230462IPR002913START domain
SuperFamilySSF559611.99E-35232461No hitNo description
CDDcd088753.28E-131234458No hitNo description
SMARTSM002344.8E-62239459IPR002913START domain
PfamPF018521.4E-57240459IPR002913START domain
Gene3DG3DSA:3.30.530.201.5E-5335436IPR023393START-like domain
SuperFamilySSF559611.89E-24479719No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MFQQPSNMME GQLHPLESES EIGRMRDDEL DSTTKSGSEN HEAASGDDQN PRPNKKKRYH  60
RHTQHQIQEM EAFFKECPHP DDKQRKELGR ELGLEPLQVK FWFQNKRTQM KTQHERHENT  120
QLRTENEKLR ADNMRYREAL STASCPNCGG PTAVGQMSFD EHHLRLENAR LREEIDRISA  180
IAAKYVGKPV VSYPLLSSPM TPRPFEFGAQ PGTGDMYGAG DLLRSISSPS EADKPIIIEL  240
AVAAMEELVR MAQMGEPLWM TSLDGTTYVL NEEEYIRTFP RGIGPKPTGF KCEASRETAV  300
VIMNHINLVE ILMDVNQWST VFSGIVSKAS TLDVLSTGIA GNYNGALQVM ATEFQVPSPL  360
VPTRESYYVR YCKQHAEGTW AVVDVSLDNI RPSPTARCRR RPSGCLIQEM PNGYSKVTWV  420
EHVEVDDSGV HSLYKQLVST GHAFGAQRWI ATLDRQCERL ASVMATNVPT GDVGVITNQD  480
GRKSMLKLAE RMVMSFCAGV SASTAHTWTT LSGTGADDVR VMTRKSVDDP GRPPGIVLSA  540
ATSFWLPVSP KRVFDFLRDE NSRSEWDILS NGGVVQEMAH IANGRDTGNC VSLLRVNSAN  600
SSQSNMLILQ ESCTDPTASF VIYAPVDIVA MNVVLNGGDP DYVALLPSGF AILPDGSTIT  660
ATTSSAGGGI DTDAAGSSSG SLLTVAFQIL VDSVPTAKLS LGSVATVNNL IACTVERIKA  720
SLSCENA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463792.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A0D2TYQ90.0A0A0D2TYQ9_GOSRA; Uncharacterized protein
STRINGGorai.013G100200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]