PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G098600.1

Common Name

B456_013G098600, LOC105782938

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 556aa MW: 59113.3 Da PI: 5.712

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G098600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.1	7.3e-09	372	420	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Gorai.013G098600.1 372 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 420 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.89E-17	367	437	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.69E-11	367	424	No hit	No description
PROSITE profile	PS50888	15.478	369	419	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-17	370	437	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.9E-6	372	420	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	375	425	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
MDVGEKDKYE LEKRNDNSLN YQASSMSSAW QFGGSNLTST PMSLVSSDNP LVIGSSSASA 60 SMGDSFCSNL WEHPSNSQNL GFCDINVQNG ASSSNAMGIG RGGPASVRGS IDRPFEMGWN 120 ASSSMLKGGI FLPNASGVLP SSLSQLPTDS AFIERAAKFS SFNGGNFSDI VNPFGIPEAM 180 GVYARGVGLM QGPQDVYTIS GIKSISGVES QRSKLITTEA SRDLPAENRA TQESPLKNER 240 NGGSLVRSNE EAKQGNGGSG NESNEAESSG GAGGHDEPSA LDGTAGESSA KILSSKKRKR 300 SVQEAEVDQA KGSQSPVEAT KDGAENQQKV DQNQTTMVNK TTAKHGKQGS QASDPPKEEY 360 IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ 420 RQVEFLSMKL ATVNPRVDCN IEGLLAKDII QSRAGPSTLG FSPDLSVGYP PLHPSQPGLG 480 PGGFPVMENN ADIIRRTLSS HFTPMTGGFK EPNQLSNAWE DELHNVVQMN YGTSTASDSQ 540 EVNGSQPSGH TKVEL*

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

MDVGEKDKYE LEKRNDNSLN YQASSMSSAW QFGGSNLTST PMSLVSSDNP LVIGSSSASA  60
SMGDSFCSNL WEHPSNSQNL GFCDINVQNG ASSSNAMGIG RGGPASVRGS IDRPFEMGWN  120
ASSSMLKGGI FLPNASGVLP SSLSQLPTDS AFIERAAKFS SFNGGNFSDI VNPFGIPEAM  180
GVYARGVGLM QGPQDVYTIS GIKSISGVES QRSKLITTEA SRDLPAENRA TQESPLKNER  240
NGGSLVRSNE EAKQGNGGSG NESNEAESSG GAGGHDEPSA LDGTAGESSA KILSSKKRKR  300
SVQEAEVDQA KGSQSPVEAT KDGAENQQKV DQNQTTMVNK TTAKHGKQGS QASDPPKEEY  360
IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ  420
RQVEFLSMKL ATVNPRVDCN IEGLLAKDII QSRAGPSTLG FSPDLSVGYP PLHPSQPGLG  480
PGGFPVMENN ADIIRRTLSS HFTPMTGGFK EPNQLSNAWE DELHNVVQMN YGTSTASDSQ  540
EVNGSQPSGH TKVEL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	295	300	KKRKRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF146811	9e-91	EF146811.1 Populus trichocarpa clone WS01214_F06 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012463497.1	0.0	PREDICTED: transcription factor bHLH49
Refseq	XP_012463498.1	0.0	PREDICTED: transcription factor bHLH49
Refseq	XP_012463499.1	0.0	PREDICTED: transcription factor bHLH49
Refseq	XP_012463500.1	0.0	PREDICTED: transcription factor bHLH49
TrEMBL	A0A0D2SBD4	0.0	A0A0D2SBD4_GOSRA; Uncharacterized protein
STRING	Gorai.013G098600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5900	25	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-126	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G098600.1
Entrez Gene	105782938

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]