PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G096100.1 | ||||||||
Common Name | B456_013G096100, LOC105784488 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 246aa MW: 28602.6 Da PI: 8.4533 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.4 | 6.1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+S+LCdaeva+i+fs++gkl+eys+ Gorai.013G096100.1 9 KRIENKINRQVTFSKRRAGLLKKAHEISILCDAEVALIVFSHKGKLFEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 106.1 | 4.3e-35 | 76 | 174 | 2 | 100 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 ++++ +++e + + +++ ++++Lk+++e Lqr++Rh++Ge+LesLslkeLq+LeqqL+++lk iRskKn+l++e+i+elq+kek++qe+n+ Gorai.013G096100.1 76 AERQLVATEPESQGNWSMDYNRLKAKVELLQRNHRHYMGEELESLSLKELQNLEQQLDTALKLIRSKKNQLMYESISELQRKEKAIQEQNT 166 56667777778889***************************************************************************** PP K-box 93 aLrkklee 100 +L k+++e Gorai.013G096100.1 167 MLAKQIKE 174 *****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.17 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-34 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.50E-42 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 7.8E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.2E-29 | 86 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.135 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISILCD AEVALIVFSH KGKLFEYSTD 60 SCMEKILERY ERYSYAERQL VATEPESQGN WSMDYNRLKA KVELLQRNHR HYMGEELESL 120 SLKELQNLEQ QLDTALKLIR SKKNQLMYES ISELQRKEKA IQEQNTMLAK QIKEREKTVA 180 QQQQQQPQWG QQDHGLNTSS FLLPQPPPCL NIGGTYQEEA TEMRRNELDL TLEPIYSCHL 240 GCFAA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 9e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 9e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 9e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 9e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 8e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 8e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 8e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 8e-22 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00096 | ChIP-seq | Transfer from AT1G69120 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC155636 | 0.0 | KC155636.1 Gossypium hirsutum MADS box protein MADS41 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001313746.1 | 0.0 | truncated transcription factor CAULIFLOWER A-like | ||||
Refseq | XP_012465848.1 | 0.0 | PREDICTED: truncated transcription factor CAULIFLOWER A-like | ||||
Swissprot | Q6E6S7 | 1e-149 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | A0A0D2VCZ2 | 0.0 | A0A0D2VCZ2_GOSRA; Uncharacterized protein | ||||
TrEMBL | U5L316 | 0.0 | U5L316_GOSHI; MADS box protein MADS41 | ||||
STRING | Gorai.013G096100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM792 | 25 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-116 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G096100.1 |
Entrez Gene | 105784488 |
Publications ? help Back to Top | |||
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