PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G096000.1
Common NameB456_013G096000, LOC105784588
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 27720.6 Da    PI: 6.6811
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G096000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.82.1e-31959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs++gklye++s
  Gorai.013G096000.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCS 59
                        79***********************************************96 PP
2K-box966e-3282172999
               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         ++e +a+s +qe+ kLk+++e Lq++qRh+lGe++ +L  keL+qLe+qL+ slkkiRs+K++l+++q++elq ke+ l e+n++Lr+kl+
  Gorai.013G096000.1  82 QTEIDAQSNYQEYLKLKSKVEVLQQSQRHFLGEEIADLGTKELEQLEHQLDFSLKKIRSTKMQLMIDQLSELQTKEEVLLETNRNLRMKLD 172
                         5677899*********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.347161IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-41160IPR002100Transcription factor, MADS-box
CDDcd002656.49E-43278No hitNo description
SuperFamilySSF554556.93E-33280IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-32323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-323859IPR002100Transcription factor, MADS-box
PfamPF014864.2E-2686171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.97187177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSN RGKLYEFCST  60
SSMAKTLEKY NSYTYGALEP GQTEIDAQSN YQEYLKLKSK VEVLQQSQRH FLGEEIADLG  120
TKELEQLEHQ LDFSLKKIRS TKMQLMIDQL SELQTKEEVL LETNRNLRMK LDGSGPSMRS  180
SWETGEHSIP YNHPPPPPQS EGFFEPLHCN NSLQIGYNPI SVTVEDTATA SALAPSGFIP  240
GWML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-25751731104Developmental protein SEPALLATA 3
4ox0_B2e-25751731104Developmental protein SEPALLATA 3
4ox0_C2e-25751731104Developmental protein SEPALLATA 3
4ox0_D2e-25751731104Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364340.0HM236434.1 Gossypium hirsutum MADS18 mRNA, complete cds.
GenBankJF2718850.0JF271885.1 Gossypium hirsutum SEPALLATA2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314085.10.0MADS-box protein CMB1-like
RefseqXP_012465945.10.0PREDICTED: MADS-box protein CMB1-like
SwissprotQ8LLR21e-106MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A0D2TYG80.0A0A0D2TYG8_GOSRA; Uncharacterized protein
TrEMBLI6MN900.0I6MN90_GOSHI; MADS-box protein CMB1-like
STRINGGorai.013G096000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71352440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.27e-96MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]