PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G095700.3
Common NameB456_013G095700, LOC105783810
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 504aa    MW: 55702.6 Da    PI: 7.61
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G095700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.18e-41170245176
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                         +Cqv gC++dls+ k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l efDe+krsCr+rLa+hnerrrk 
  Gorai.013G095700.3 170 CCQVYGCNKDLSSSKDYHKRHKVCEAHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDEGKRSCRKRLAGHNERRRKL 245
                         6*************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.9E-34163232IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.436168245IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-38169249IPR004333Transcription factor, SBP-box
PfamPF031106.6E-32171244IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MESWSYGSEG KGLLFTDEMD VDAFSRSRKA MLSWDLKPST DLEGVESMEF MDFGIAADMN  60
KKPFYGNTSM GIFGAEFGND STKSLVSPTC MISSTSDFGE EESGSKHCSS LMDSNSQESS  120
LIDLKLGRLT DYKDAHHGKF LKETSVVSPV RPAIVPKKAR TTSSHSQIPC CQVYGCNKDL  180
SSSKDYHKRH KVCEAHSKTA KVIVNGIEQR FCQQCSRFHL LAEFDEGKRS CRKRLAGHNE  240
RRRKLHFNTF SGKSHKLPHS YQGTKFLGTS IPKQMPFVIP NIFQVDFLHP ERHAYSNQYQ  300
QVKSEEKPMY SSQSAMPITN GQSSFFHMHD SGKQHLSGTL SSATEVFGAP SAAPTVKELS  360
GVSRSDCALS LLSAQSLDLS SHVTGIQMTR PLINQAGLAH RSTEKSAVMS YSEKGSSFYS  420
CGMNPTGVSQ EGSVVVPDAG HTANFEGKVQ DLDLLSARYC LSPETGTTVD LLQLSTHLQR  480
VEQQRNSMQV KQENEDLFYF LST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-29162244284squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223300.0KJ622330.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464919.10.0PREDICTED: squamosa promoter-binding-like protein 6
RefseqXP_012464920.10.0PREDICTED: squamosa promoter-binding-like protein 6
TrEMBLA0A0D2TYG20.0A0A0D2TYG2_GOSRA; Uncharacterized protein
STRINGGorai.013G095700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.15e-52SBP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]