PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G095700.2 | ||||||||
Common Name | B456_013G095700, LOC105783810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SBP | ||||||||
Protein Properties | Length: 504aa MW: 55702.6 Da PI: 7.61 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.1 | 8e-41 | 170 | 245 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv gC++dls+ k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l efDe+krsCr+rLa+hnerrrk Gorai.013G095700.2 170 CCQVYGCNKDLSSSKDYHKRHKVCEAHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDEGKRSCRKRLAGHNERRRKL 245 6*************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.9E-34 | 163 | 232 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.436 | 168 | 245 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.88E-38 | 169 | 249 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.6E-32 | 171 | 244 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MESWSYGSEG KGLLFTDEMD VDAFSRSRKA MLSWDLKPST DLEGVESMEF MDFGIAADMN 60 KKPFYGNTSM GIFGAEFGND STKSLVSPTC MISSTSDFGE EESGSKHCSS LMDSNSQESS 120 LIDLKLGRLT DYKDAHHGKF LKETSVVSPV RPAIVPKKAR TTSSHSQIPC CQVYGCNKDL 180 SSSKDYHKRH KVCEAHSKTA KVIVNGIEQR FCQQCSRFHL LAEFDEGKRS CRKRLAGHNE 240 RRRKLHFNTF SGKSHKLPHS YQGTKFLGTS IPKQMPFVIP NIFQVDFLHP ERHAYSNQYQ 300 QVKSEEKPMY SSQSAMPITN GQSSFFHMHD SGKQHLSGTL SSATEVFGAP SAAPTVKELS 360 GVSRSDCALS LLSAQSLDLS SHVTGIQMTR PLINQAGLAH RSTEKSAVMS YSEKGSSFYS 420 CGMNPTGVSQ EGSVVVPDAG HTANFEGKVQ DLDLLSARYC LSPETGTTVD LLQLSTHLQR 480 VEQQRNSMQV KQENEDLFYF LST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-29 | 162 | 244 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ622330 | 0.0 | KJ622330.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL22) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012464919.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_012464920.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A0D2TYG2 | 0.0 | A0A0D2TYG2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G095700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14770 | 9 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 5e-52 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G095700.2 |
Entrez Gene | 105783810 |
Publications ? help Back to Top | |||
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