PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G095700.1 | ||||||||
Common Name | B456_013G095700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SBP | ||||||||
Protein Properties | Length: 473aa MW: 52593.1 Da PI: 7.7913 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.2 | 7.3e-41 | 139 | 214 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv gC++dls+ k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l efDe+krsCr+rLa+hnerrrk Gorai.013G095700.1 139 CCQVYGCNKDLSSSKDYHKRHKVCEAHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDEGKRSCRKRLAGHNERRRKL 214 6*************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.6E-34 | 132 | 201 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.436 | 137 | 214 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.62E-38 | 138 | 218 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.0E-32 | 140 | 213 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MESWSYGSEG KGLLFTDEMD VDAFSRSRKA MLSWDLKPST DLEGVESMEF MDFGIAADMN 60 KKPFYDFGEE ESGSKHCSSL MDSNSQESSL IDLKLGRLTD YKDAHHGKFL KETSVVSPVR 120 PAIVPKKART TSSHSQIPCC QVYGCNKDLS SSKDYHKRHK VCEAHSKTAK VIVNGIEQRF 180 CQQCSRFHLL AEFDEGKRSC RKRLAGHNER RRKLHFNTFS GKSHKLPHSY QGTKFLGTSI 240 PKQMPFVIPN IFQVDFLHPE RHAYSNQYQQ VKSEEKPMYS SQSAMPITNG QSSFFHMHDS 300 GKQHLSGTLS SATEVFGAPS AAPTVKELSG VSRSDCALSL LSAQSLDLSS HVTGIQMTRP 360 LINQAGLAHR STEKSAVMSY SEKGSSFYSC GMNPTGVSQE GSVVVPDAGH TANFEGKVQD 420 LDLLSARYCL SPETGTTVDL LQLSTHLQRV EQQRNSMQVK QENEDLFYFL ST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-29 | 131 | 213 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ622330 | 0.0 | KJ622330.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL22) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012464919.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_012464920.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A0D2VCY8 | 0.0 | A0A0D2VCY8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G095700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 2e-53 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G095700.1 |
Publications ? help Back to Top | |||
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