PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G088300.2

Common Name

B456_013G088300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 302aa MW: 33370.2 Da PI: 7.8764

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G088300.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	9.5e-17	14	57	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +g+WT+eEd++l+ +++q+G g+W++ +++ g+ R++k+c++rw Gorai.013G088300.2 14 KGPWTPEEDQKLLAYIEQHGHGSWRALPAKAGLQRCGKSCRLRW 57 79****************************************** PP
2	Myb_DNA-binding	25.7	2.8e-08	56	80	23	48
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W+ Ia++++ +Rt++++k++w+++l Gorai.013G088300.2 56 RWSGIAAHLP-KRTDNEIKNYWNTHL 80 4*******.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-19	5	56	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.869	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	3.02E-18	11	76	IPR009057	Homeodomain-like
SMART	SM00717	6.4E-17	13	82	IPR001005	SANT/Myb domain
Pfam	PF00249	7.8E-15	14	57	IPR001005	SANT/Myb domain
CDD	cd00167	2.64E-13	16	80	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-12	57	91	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE QHGHGSWRAL PAKAGLQRCG KSCRLRWSGI 60 AAHLPKRTDN EIKNYWNTHL KKRLNKMGID PVTHKPKTNA LGSATGNPKD AATLSHMAQW 120 ESARLEAEAR LVRESKLVRF SSSSSSSSSA PQHTSNPVMT PPATRPQCLD VLKAWQGLVT 180 GLFTFNNTTD NLQSPTSTLN FVENTNTLAN GLINDNSMEL HEMGAWFRQD SSYRAVENMN 240 MEDYSDMMVW ESGDHQQCSS MAAPAENLNE TSYGNSSSSS SSSSSLEETR NYWNNILNLV 300 S*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269\|PubMed:18805951}.

Functional Description ? help Back to Top
Source	Description
UniProt	Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269\|PubMed:18805951, ECO:0000269\|PubMed:21070410, ECO:0000269\|PubMed:23709630, ECO:0000269\|PubMed:24169067}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616591	1e-112	JX616591.1 Gossypium hirsutum clone NBRI_GE61362 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461180.1	0.0	PREDICTED: myb-related protein Myb4-like
Swissprot	Q9LE63	1e-80	MY106_ARATH; Transcription factor MYB106
TrEMBL	A0A0D2W475	0.0	A0A0D2W475_GOSRA; Uncharacterized protein
STRING	Gorai.013G088300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	6e-78	myb domain protein 16

Link Out ? help Back to Top
Phytozome	Gorai.013G088300.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]