PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G088200.1
Common NameB456_013G088200, LOC105781809
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 314aa    MW: 35612.6 Da    PI: 8.2985
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G088200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-181764148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEd++l  +++q+G g+W++ +++ g++R++k+c++rw +yl
  Gorai.013G088200.1 17 RGPWTAEEDQILMAYIQQHGHGNWRALPEKAGLKRCGKSCRLRWINYL 64
                        89********************************************97 PP
2Myb_DNA-binding48.52.1e-1570115148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++ +E+  +++++++lG++ W++ a++++ +Rt++++k++w+++l
  Gorai.013G088200.1  70 RGKFSLQEEHTIIQLHALLGNR-WSAMAAHLP-KRTDNEIKNYWNTHL 115
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.9951268IPR017930Myb domain
SuperFamilySSF466893.37E-3014111IPR009057Homeodomain-like
SMARTSM007171.0E-141666IPR001005SANT/Myb domain
PfamPF002491.4E-161764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-251871IPR009057Homeodomain-like
CDDcd001673.08E-111964No hitNo description
SMARTSM007173.3E-1469117IPR001005SANT/Myb domain
PROSITE profilePS5129418.46969119IPR017930Myb domain
PfamPF002498.1E-1570115IPR001005SANT/Myb domain
CDDcd001671.93E-972115No hitNo description
Gene3DG3DSA:1.10.10.609.7E-2672120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGWRLPFNGH KEVGLKRGPW TAEEDQILMA YIQQHGHGNW RALPEKAGLK RCGKSCRLRW  60
INYLRPDIKR GKFSLQEEHT IIQLHALLGN RWSAMAAHLP KRTDNEIKNY WNTHLKKRLI  120
KLGVDPMTHK PRTDASSFPS GSNLTHMAQW ESARLEAEAR LVRDSKQVIP NPIHPKNHLT  180
LNHIQLRPRC LDVLKAWQGV VAGMFAFPTQ DLGSPTSTLR FPAIGLNATS YTDGEMGFDD  240
SLKCIENSNQ MKEIEETITD GCIDEWFEDS FRVGNYENVP MAVGSSNCCD SVFDLVNSSP  300
YGLSMLYDHN VMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24151195108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, epidermis and mesophyll cells of young leaves, stems, petals, sepals, carpels and stamens. {ECO:0000269|PubMed:23709630}.
UniprotTISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}.
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3362831e-57AF336283.1 Gossypium hirsutum GHMYB25 (ghmyb25) mRNA, complete cds.
GenBankEU8264651e-57EU826465.1 Gossypium hirsutum cultivar Acala Maxxa R2R3 MYB transcription factor gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461787.10.0PREDICTED: myb-related protein Pp1-like
SwissprotQ9LE634e-86MY106_ARATH; Transcription factor MYB106
SwissprotQ9LXF13e-86MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A0D2TXV60.0A0A0D2TXV6_GOSRA; Uncharacterized protein
STRINGGorai.013G088200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2244245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-88myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  5. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]