PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G086600.1
Common NameB456_013G086600, LOC105784517
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 344aa    MW: 38643.9 Da    PI: 6.784
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G086600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.41.2e-201053245
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        + en+  rq t++kR++gi+KKA+ELS+LCd+e+ +++fs+t+k
  Gorai.013G086600.1 10 KLENTNGRQATYAKRKHGIMKKANELSILCDVEIILLMFSPTNK 53
                        6799*************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.563153IPR002100Transcription factor, MADS-box
SMARTSM004329.9E-29160IPR002100Transcription factor, MADS-box
CDDcd002665.88E-26282No hitNo description
SuperFamilySSF554552.22E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-16323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-181154IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGRVKLKIKK LENTNGRQAT YAKRKHGIMK KANELSILCD VEIILLMFSP TNKPSVCIGK  60
RSSIEEIIEK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIHEFLGSS TQTIEDLTNQ  120
ARLLQARLSE IHRRLSCWTD VDKINNVEHL GQMEDSLKDY LNQIRAHKEN LGKQQLLPIE  180
CTSQFQNEMH VPFRMGIEQQ LQSLAWMPNN DSRHMALPED PNLIPPRDVE CSASSSFGSY  240
SGYFGTPKSS ELSSSGQENG ILNDLQLGGQ CPFFSYDLSI LNDRKFPPVA EMNFPETPVD  300
YHVNGVLAGP RAGYDPNQGS WASTSGPCAV TMFDEPLYTG QLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-13192190MEF2 CHIMERA
6byy_B3e-13192190MEF2 CHIMERA
6byy_C3e-13192190MEF2 CHIMERA
6byy_D3e-13192190MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364480.0HM236448.1 Gossypium hirsutum MADS32 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465871.10.0PREDICTED: MADS-box protein CMB2-like isoform X1
RefseqXP_012465873.10.0PREDICTED: MADS-box protein CMB2-like isoform X1
RefseqXP_016703928.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_016703929.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X1
SwissprotQ1PFA41e-117AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A0D2VCG50.0A0A0D2VCG5_GOSRA; Uncharacterized protein
TrEMBLA0A1U8KT880.0A0A1U8KT88_GOSHI; agamous-like MADS-box protein AGL30 isoform X1
STRINGGorai.013G086600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87542539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-108AGAMOUS-like 30
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]