PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G086300.3

Common Name

B456_013G086300, LOC105782272

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 282aa MW: 30852.9 Da PI: 6.6187

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G086300.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	33	1.3e-10	1	23	33	55
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m+++gLtl+h+kSHLQkYRl Gorai.013G086300.3 1 MRVMGIPGLTLYHLKSHLQKYRL 23 789*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-9	1	23	IPR009057	Homeodomain-like
Pfam	PF14379	1.6E-21	60	106	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MRVMGIPGLT LYHLKSHLQK YRLGKSLGDN TDYKEMQSSN GNFIRDTSDG IHGHMNESLQ 60 IPQALQMQME VQQKLNEQIE VQRHLQLRIE AQGKYLQTVL KKAQETLAGY SSSSAGAELA 120 RAELSQLVSM VNTGCTSSSF SELTEVGGSS IIERKPMRGT ICSMGSSLTS SESSGRNDKA 180 PLENGNICTQ NVEFSLMDIH PEKKPLISCA SNQANGKKRS VSKVSDGVCV EQPLAKRLEL 240 PEEETGGCLR KSGFLELFDL NSQCHNDIES GPKAIDLNCR E*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578986	8e-99	JX578986.1 Gossypium hirsutum clone NBRI_GE11130 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012462358.1	0.0	PREDICTED: uncharacterized protein LOC105782272 isoform X1
Swissprot	F4I274	2e-62	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A0D2VB37	0.0	A0A0D2VB37_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2VCG3	0.0	A0A0D2VCG3_GOSRA; Uncharacterized protein
STRING	Gorai.013G086300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	9e-63	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G086300.3
Entrez Gene	105782272

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]