PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.013G086300.1 | ||||||||
Common Name | B456_013G086300, LOC105782272 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 357aa MW: 39281.6 Da PI: 7.9568 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.8 | 5.7e-34 | 44 | 98 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFv+av+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl Gorai.013G086300.1 44 KPRLKWTPELHQRFVDAVNQLGGPDKATPKSVMRVMGIPGLTLYHLKSHLQKYRL 98 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.016 | 41 | 101 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-32 | 42 | 98 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.73E-17 | 43 | 98 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.2E-24 | 44 | 99 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.0E-10 | 46 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.2E-21 | 135 | 181 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 357 aa Download sequence Send to blast |
MVSTKKGSKT TYEIQFPACL SYINLVLQNT QNQRMNLVLS TDAKPRLKWT PELHQRFVDA 60 VNQLGGPDKA TPKSVMRVMG IPGLTLYHLK SHLQKYRLGK SLGDNTDYKE MQSSNGNFIR 120 DTSDGIHGHM NESLQIPQAL QMQMEVQQKL NEQIEVQRHL QLRIEAQGKY LQTVLKKAQE 180 TLAGYSSSSA GAELARAELS QLVSMVNTGC TSSSFSELTE VGGSSIIERK PMRGTICSMG 240 SSLTSSESSG RNDKAPLENG NICTQNVEFS LMDIHPEKKP LISCASNQAN GKKRSVSKVS 300 DGVCVEQPLA KRLELPEEET GGCLRKSGFL ELFDLNSQCH NDIESGPKAI DLNCRE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-21 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-21 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-21 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-21 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX578986 | 1e-98 | JX578986.1 Gossypium hirsutum clone NBRI_GE11130 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012462358.1 | 0.0 | PREDICTED: uncharacterized protein LOC105782272 isoform X1 | ||||
Swissprot | F4I274 | 9e-89 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A0D2VCG3 | 0.0 | A0A0D2VCG3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G086300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3878 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69580.1 | 3e-89 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.013G086300.1 |
Entrez Gene | 105782272 |
Publications ? help Back to Top | |||
---|---|---|---|
|