PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G085000.1
Common NameB456_013G085000, LOC105781857
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 381aa    MW: 42415.2 Da    PI: 8.2708
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G085000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.55.1e-53141411128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         + pGfrFhPtdeelv +yLk+kv++++ ++ e+ik++diyk++PwdLpk+++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++
  Gorai.013G085000.1  14 MLPGFRFHPTDEELVGFYLKRKVQQRPPSM-EFIKQLDIYKYDPWDLPKMATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRP 103
                         579************************999.99***************9888999************************************ PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  Gorai.013G085000.1 104 IYSSeGNKCIGLKKSLVFYKGRATKGVKTDWMMHEFRL 141
                         ***956667***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5812172IPR003441NAC domain
PROSITE profilePS5100556.97414172IPR003441NAC domain
PfamPF023657.0E-2616141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MKERSESDKM EEIMLPGFRF HPTDEELVGF YLKRKVQQRP PSMEFIKQLD IYKYDPWDLP  60
KMATTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGN KCIGLKKSLV  120
FYKGRATKGV KTDWMMHEFR LPSLADSAPP KIFLEKTLPP NDAWAICRIF KKTNSTAQRA  180
LSQSRVSQVP ETSSSSISEV PSMPLTAKTS LNLNVDLLQT SNGAFSSLDF VPYKPPQHSM  240
SNGDLTSLVF TPLDHTSTDS RAVDVTSMLL NMLSSILGDH YCGRATDGLH FGGGFTGTLP  300
HELQGNNMMS GGDHESSLFK SLNVGSHGDD QWGGVRSIGF PISMPLPMNV MGDAWKPSLA  360
WDSSCPSEMS TSFCSTKCYT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-5351797171NO APICAL MERISTEM PROTEIN
1ut4_B2e-5351797171NO APICAL MERISTEM PROTEIN
1ut7_A2e-5351797171NO APICAL MERISTEM PROTEIN
1ut7_B2e-5351797171NO APICAL MERISTEM PROTEIN
3swm_A3e-53517910174NAC domain-containing protein 19
3swm_B3e-53517910174NAC domain-containing protein 19
3swm_C3e-53517910174NAC domain-containing protein 19
3swm_D3e-53517910174NAC domain-containing protein 19
3swp_A3e-53517910174NAC domain-containing protein 19
3swp_B3e-53517910174NAC domain-containing protein 19
3swp_C3e-53517910174NAC domain-containing protein 19
3swp_D3e-53517910174NAC domain-containing protein 19
4dul_A2e-5351797171NAC domain-containing protein 19
4dul_B2e-5351797171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472360.0KC847236.1 Gossypium hirsutum NAC domain protein NAC59 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314086.10.0protein FEZ-like
RefseqXP_012461836.10.0PREDICTED: protein FEZ
SwissprotQ9ZVH01e-102FEZ_ARATH; Protein FEZ
TrEMBLA0A0D2SAQ40.0A0A0D2SAQ4_GOSRA; Uncharacterized protein
TrEMBLW6J8T20.0W6J8T2_GOSHI; NAC domain protein NAC59
STRINGGorai.013G085000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-101NAC family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]