PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G083600.1 | ||||||||
Common Name | B456_013G083600, LOC105783614 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 290aa MW: 32949.9 Da PI: 6.5076 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.3 | 5.4e-18 | 84 | 137 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Gorai.013G083600.1 84 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARDLGLQPRQIAIWFQNRRARWK 137 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130.4 | 7.1e-42 | 83 | 173 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lk++y+a+k++n++L++++++L++e+ Gorai.013G083600.1 83 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARDLGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKKQYEAIKADNDALQAQNQKLHAEI 173 69**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.52E-19 | 68 | 141 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.362 | 79 | 139 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-17 | 82 | 143 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.2E-15 | 84 | 137 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.34E-16 | 84 | 140 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-19 | 86 | 146 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 110 | 119 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 114 | 137 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 119 | 135 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.2E-16 | 139 | 180 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MSCNGMAFFP ANFMLQTPHE EDHHHHQPPT SINQMLPSCT PQDFHGVASF LGKRSISFSG 60 IDHVCEEGNG EDDLSDDGSQ AGEKKRRLNM EQVKTLEKNF ELGNKLEPER KMQLARDLGL 120 QPRQIAIWFQ NRRARWKTKQ LEKDYDLLKK QYEAIKADND ALQAQNQKLH AEILALKGKE 180 PTESINLNKE TEGSCSNRSE NSSDVKLGMS RTPTVIDSHP TSCRTLFPTS IRPTTAVAQL 240 FQTSSSRPDN HLQCQKMDQI VKEEGLGNMF CNIEDQTGFW PWLEQHHFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 139 | RRARWKTKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012464631.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-13 | ||||
Swissprot | Q8LC03 | 1e-116 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A0D2TXK6 | 0.0 | A0A0D2TXK6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G083600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2633 | 27 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-111 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G083600.1 |
Entrez Gene | 105783614 |
Publications ? help Back to Top | |||
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