PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G077400.9 | ||||||||
Common Name | B456_013G077400, LOC105782816 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Whirly | ||||||||
Protein Properties | Length: 233aa MW: 25797.5 Da PI: 10.1795 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 219.7 | 2.6e-68 | 93 | 231 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvr 91 s+yk+kaal+v++++p+f+ ldsg++k++r+G++ll++a+a+++r+ydW++kq+f+ls+te+++l++l+ +esceffhdp++++s+eGkvr Gorai.013G077400.9 93 SIYKGKAALTVEPRAPEFVPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGTLISLGMRESCEFFHDPFKGKSDEGKVR 183 7****************************************************************************************** PP Whirly 92 kalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 k+lkvePlpdGsG+f+nl v+n+l++++e++++P++++ef+vl+s+++ Gorai.013G077400.9 184 KVLKVEPLPDGSGHFFNLGVQNKLLNVDENVYIPITRGEFTVLKSAFS 231 *********************************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 1.8E-67 | 85 | 231 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.73E-62 | 87 | 231 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 2.0E-61 | 94 | 229 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MLQLQLLSSP PLTPQTLNLN SISNPKLFPS FSSLNSSQTR SFKFNPLSKP SKFSLKCRQS 60 EYFDQKQRFN DSSSSTSPSS LAGLPARFYV GHSIYKGKAA LTVEPRAPEF VPLDSGAFKI 120 SREGFVLLQF APAAGVRQYD WSRKQVFSLS VTEIGTLISL GMRESCEFFH DPFKGKSDEG 180 KVRKVLKVEP LPDGSGHFFN LGVQNKLLNV DENVYIPITR GEFTVLKSAF SV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4koo_A | 1e-95 | 83 | 231 | 4 | 152 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_B | 1e-95 | 83 | 231 | 4 | 152 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_C | 1e-95 | 83 | 231 | 4 | 152 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_D | 1e-95 | 83 | 231 | 4 | 152 | Single-stranded DNA-binding protein WHY1, chloroplastic |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.556 | 0.0 | seedling |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 48746181 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX617609 | 6e-90 | JX617609.1 Gossypium hirsutum clone NBRI_GE62797 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012463277.1 | 1e-168 | PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X3 | ||||
Swissprot | Q9M9S3 | 1e-107 | WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A0D2VC61 | 1e-167 | A0A0D2VC61_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G077400.1 | 1e-168 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 1e-103 | ssDNA-binding transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G077400.9 |
Entrez Gene | 105782816 |