PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G071800.1

Common Name

B456_013G071800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 170aa MW: 20119.4 Da PI: 9.8334

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G071800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.4	5e-15	6	55	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 kr+ n++ r t+ kR++ +lK A ELS L ++v +++fs+tg++ ++ Gorai.013G071800.1 6 KRSGNSRSRRMTYVKRKESVLKQAAELSMLYHIDVGLMMFSPTGQFTSFA 55 7899******************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.7E-7	1	57	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.06E-17	4	75	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.97	4	58	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.3E-13	10	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.8E-5	20	35	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.8E-5	35	56	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MAEKMKRSGN SRSRRMTYVK RKESVLKQAA ELSMLYHIDV GLMMFSPTGQ FTSFAHKGRV 60 EDIFLRYLDH NDEHKEPLEN EARLKYEAEI LDKLGRYHAL ERKLADLNWK KYEAEDKMRS 120 YNPDMTKILT ISEADLHQQF VMDAILRIEK IKSCLSKRFH LQSRMMLRC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017617909.1	8e-97	PREDICTED: agamous-like MADS-box protein AGL66
TrEMBL	A0A0D2VAG7	1e-122	A0A0D2VAG7_GOSRA; Uncharacterized protein
STRING	Gorai.013G071800.1	1e-123	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16598	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	1e-20	AGAMOUS-like 66

Link Out ? help Back to Top
Phytozome	Gorai.013G071800.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]