PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G068600.1

Common Name

B456_013G068600, LOC105782793

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 257aa MW: 26423.6 Da PI: 10.3339

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G068600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.3	2.8e-38	28	113	2	88
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s+ ++++s + Gorai.013G068600.1 28 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVSVRGGANSTS 113 78*******************************************************************777.34444444433333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.6E-33	34	123	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	34	88	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MSNSEAAAKN GATMDTQRQQ APGNGALAVK KPPSKDRHSK VDGRGRRIRM PIICAARVFQ 60 LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTTPASFST VSVSVRGGAN STSLPSTTSS 120 SLDHKPLLGS TPFLLGKRVR PDDDNAGKDD SGGATVGPGV GSIVGPAGTH TGAFWAVPAR 180 PDFGQIWSFA PPPPPEMVVQ TAAQQPAAAA FFVQQQQAMG EASAARVGNY LPGHLNLLAS 240 LSGAPGGSGQ RDDDPR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012463239.1	0.0	PREDICTED: transcription factor TCP21
Swissprot	Q9FMX2	1e-94	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0D2VBM4	0.0	A0A0D2VBM4_GOSRA; Uncharacterized protein
TrEMBL	A0A2P5Y7A7	0.0	A0A2P5Y7A7_GOSBA; Uncharacterized protein
STRING	Gorai.013G068600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-68	TCP family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G068600.1
Entrez Gene	105782793

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]