PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G067600.1
Common NameB456_013G067600, LOC105782982
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 298aa    MW: 31504.7 Da    PI: 6.5895
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G067600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.1e-101154344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         W+ + d  + +a + ++ +   +W++Ia+ ++ g+tl+++k+++
  Gorai.013G067600.1 11 EWSRDQDRAFENALATYPEDsadRWEKIAADVP-GKTLEEIKEHY 54
                        7********************************.**********9 PP
2Myb_DNA-binding422.2e-13122166347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  Gorai.013G067600.1 122 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                         6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.292762IPR017884SANT domain
SMARTSM007171.5E-9860IPR001005SANT/Myb domain
SuperFamilySSF466896.43E-111165IPR009057Homeodomain-like
CDDcd001674.51E-91157No hitNo description
Gene3DG3DSA:1.10.10.606.1E-51157IPR009057Homeodomain-like
PfamPF002492.8E-71154IPR001005SANT/Myb domain
PROSITE profilePS5129417.581114171IPR017930Myb domain
SuperFamilySSF466891.27E-16117172IPR009057Homeodomain-like
SMARTSM007173.2E-10119169IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.6E-17119169IPR006447Myb domain, plants
CDDcd001678.54E-10122167No hitNo description
Gene3DG3DSA:1.10.10.601.4E-10122165IPR009057Homeodomain-like
PfamPF002492.7E-11122166IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MTVEEAGNSS EWSRDQDRAF ENALATYPED SADRWEKIAA DVPGKTLEEI KEHYELLEDD  60
INQIESGCVP LPPYDSSDGS AGHAGDEGTG KKGSSNLGHY NSESNQGSKS SRSDQERRKG  120
IAWTEDEHRL FLLGLDKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRS  180
SIHDITSVGN ADISAPQGPI TGQTNGAAAG GSSGKSVKQP PQHPAAPAGV GVYGAPTMGQ  240
PIGGGPLVSA VGTPVNLPAP AHMAYGVRAP VPGAVVHGAP MNMGTATYPI PHTSAHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-18780679RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.15460.0flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488161950.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463576.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012463577.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012463578.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012463579.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_012463580.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN61e-132SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0D2VA720.0A0A0D2VA72_GOSRA; Uncharacterized protein
STRINGGorai.013G067600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-129MYB family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]