PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G066200.1
Common NameB456_013G066200, LOC105781234
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 336aa    MW: 38227.4 Da    PI: 7.7831
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G066200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.61.2e-191062282128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv..ePwdLpkkvkaeekew..yfFskrdkkyatgkrknratksgyWkatgk 88 
                         p GfrF Pt ee+ ++yLk+ ++g++++   v+k  +iy +  ePw++       +++w   f++ ++ k+++++r +r++ +g W ++  
  Gorai.013G066200.1 106 PLGFRFLPTKEEIFCDYLKPIINGDPIPS-GVLKAHHIYGAnrEPWNIF------DQDWpeSFWVLTKLKKKSKSRIERTAGDGCWLQQFA 189
                         89*************************99.88888888865459****5......3344446777777888889************99877 PP

                 NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          kev++k +ge++g  k +++ + +++k ++ +W+mhe++l
  Gorai.013G066200.1 190 -KEVKNKdDGEVTGYDKYFTYTS-KKNKKSNGQWIMHEFSL 228
                         .55555549999********995.5555589********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-2398247IPR003441NAC domain
PROSITE profilePS5100523.269105247IPR003441NAC domain
PfamPF023653.6E-13106228IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MHEPQICCKS RRLDRCHSLR QKRVGYLPIR LHTRSQDQTV SISNDIPEHD CLKRFLESSI  60
KMRYSDVFND FQPPISGFKY GKGGHQISLI FLFVDETPIM SQLQIPLGFR FLPTKEEIFC  120
DYLKPIINGD PIPSGVLKAH HIYGANREPW NIFDQDWPES FWVLTKLKKK SKSRIERTAG  180
DGCWLQQFAK EVKNKDDGEV TGYDKYFTYT SKKNKKSNGQ WIMHEFSLKD QEAVGLSDLV  240
ICEIKNKDAA VVSSGYEESE GEIKKNKKRK LMEVPSDSTN DFATMPVGNQ TFDYMAPEVG  300
GFSPFSACLD QQPNPWTSAG VGGNLGVPDY NSHHL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263270KKNKKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5963952e-35JX596395.1 Gossypium hirsutum clone NBRI_GE32970 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461233.10.0PREDICTED: NAC domain-containing protein 19-like
TrEMBLA0A0D2TWA30.0A0A0D2TWA3_GOSRA; Uncharacterized protein
STRINGGorai.013G066200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16345312
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.18e-13NAC domain containing protein 32
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]