PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G065300.1

Common Name

B456_013G065300, LOC105782242

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 795aa MW: 90780.5 Da PI: 6.8743

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G065300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100	2.5e-31	89	180	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk +++gkw+v+ ++ eHnHel+ Gorai.013G065300.1 89 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKVQDSGKWVVSGFVREHNHELV 179 9*************************************998888545677889*********************************8 PP FAR1 91 p 91 p Gorai.013G065300.1 180 P 180 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-29	89	180	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.9E-33	302	394	IPR018289	MULE transposase domain
Pfam	PF04434	1.3E-11	570	616	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.14	582	618	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.2E-8	593	620	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence Send to blast
MDPEILEFDI GLGGGGSSGR DGDDDANIGL DVDEDMADSP APSSILASNS NGGGFGTGGG 60 EIYLPEGDLL DLEPYEGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR RDGAIIQRQF 120 VCAKEGFRNL NEKRTKDREI KRPRTITRVG CKASLSVKVQ DSGKWVVSGF VREHNHELVP 180 PDQVHCLRSH RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYMR 240 NNRQRSLEGD IQLLLDYLRQ MQAENPNFFF AVQGDEDQAL TSNVFWADPK SRMNYTYFGD 300 TVTFDTTYRS NRYRLPFAPF TGVNHHGQPI LFGCAFLINE SEASFVWLFK TWLMAMSGRP 360 PVSITTDHDA VIRSAITQVF PETRHRFCKW HIFKKCQEKL SHVFLKHPTF EADFHKCVNL 420 PESIEEFESC WLSLVDRYEL RDHEWLQMMY NDRRHWIPVY LRDTFFAEMS ITQRSDSMNS 480 YFDGFVNAST NLNQFFKLYE KALESRNEKE VKADYDTMNT SPALKTPSPM EKQASELYTR 540 KLFTRFQEEL VGTLTFMASK SDDDDDVITY QVAKFGEDHK SYYVKFNVLE MKAACSCQMF 600 EFSGLLCRHV LAVFRVTNVL TLPSHYILKR WTKNARSSVI LEERSSDVYT NYLESHTVRY 660 NTLRHETFKL VDEGSKSLDT CNVAIDALQQ AAKRVALATK NEGRATLVNG RIRGDSARDA 720 SRANTTNHKM PCQPLSEDDM DKKIRELTNE LDYASRKCEV YRSNLLSVLK DIEDHKLQLS 780 IKVQNIKISM KDGL*

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence Send to blast

MDPEILEFDI GLGGGGSSGR DGDDDANIGL DVDEDMADSP APSSILASNS NGGGFGTGGG  60
EIYLPEGDLL DLEPYEGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR RDGAIIQRQF  120
VCAKEGFRNL NEKRTKDREI KRPRTITRVG CKASLSVKVQ DSGKWVVSGF VREHNHELVP  180
PDQVHCLRSH RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYMR  240
NNRQRSLEGD IQLLLDYLRQ MQAENPNFFF AVQGDEDQAL TSNVFWADPK SRMNYTYFGD  300
TVTFDTTYRS NRYRLPFAPF TGVNHHGQPI LFGCAFLINE SEASFVWLFK TWLMAMSGRP  360
PVSITTDHDA VIRSAITQVF PETRHRFCKW HIFKKCQEKL SHVFLKHPTF EADFHKCVNL  420
PESIEEFESC WLSLVDRYEL RDHEWLQMMY NDRRHWIPVY LRDTFFAEMS ITQRSDSMNS  480
YFDGFVNAST NLNQFFKLYE KALESRNEKE VKADYDTMNT SPALKTPSPM EKQASELYTR  540
KLFTRFQEEL VGTLTFMASK SDDDDDVITY QVAKFGEDHK SYYVKFNVLE MKAACSCQMF  600
EFSGLLCRHV LAVFRVTNVL TLPSHYILKR WTKNARSSVI LEERSSDVYT NYLESHTVRY  660
NTLRHETFKL VDEGSKSLDT CNVAIDALQQ AAKRVALATK NEGRATLVNG RIRGDSARDA  720
SRANTTNHKM PCQPLSEDDM DKKIRELTNE LDYASRKCEV YRSNLLSVLK DIEDHKLQLS  780
IKVQNIKISM KDGL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012462309.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0D2W3F3	0.0	A0A0D2W3F3_GOSRA; Uncharacterized protein
STRING	Gorai.013G065300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Gorai.013G065300.1
Entrez Gene	105782242

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]