PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G063400.1

Common Name

B456_013G063400, LOC105781232

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 288aa MW: 31288.8 Da PI: 9.6976

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G063400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	41	3.2e-13	110	136	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 yk e+Cr++ ++G+C+yG++C+FaHg+ Gorai.013G063400.1 110 YKSEICRTWEEFGHCRYGSKCQFAHGK 136 99***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	7.3E-16	109	141	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.55E-10	109	140	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.9E-7	109	136	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.314	109	137	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.8E-10	110	136	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MDSFYKESNK LNVLNSNIPK LMLPARSRTN YYSSPENLIK YLRSNSLSSS GNNSSSGKSS 60 FRSSVSPQSE KTPVKVVEED VLVMDGVLVA SDTNIAGSGS SSSPGSVGFY KSEICRTWEE 120 FGHCRYGSKC QFAHGKEEVR PSCFSFRSKP EAQMYKSYAS TYGSISRPLN PIRETAATIA 180 QKESSTRPDY TNQRSSSTMK PGNTPLTTNI AMKPKTEKAS ASTIGPYTSA TNGSYWSPQD 240 DGINVTLPSS SPGKTLSRAD IDAYIDSVLY GPTTRRRLPV FSAFSPQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461229.1	0.0	PREDICTED: protein TIS11-like
Refseq	XP_012461230.1	0.0	PREDICTED: protein TIS11-like
TrEMBL	A0A0D2V9Y2	0.0	A0A0D2V9Y2_GOSRA; Uncharacterized protein
STRING	Gorai.013G063400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15770	8	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	3e-08	C3H family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G063400.1
Entrez Gene	105781232

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]