PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G055000.3
Common NameB456_013G055000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 261aa    MW: 27750.9 Da    PI: 7.0067
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G055000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.97.6e-15224257132
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 
                         Cs+Cg ++  Tp++Rrgp g++tLCnaCGl+++ 
  Gorai.013G055000.3 224 CSHCGISSkkTPMMRRGPAGPRTLCNACGLKWAN 257
                         *****88888**********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.63384119IPR010399Tify domain
SMARTSM009791.8E-1184119IPR010399Tify domain
PfamPF062001.0E-1287118IPR010399Tify domain
PfamPF062032.6E-16151193IPR010402CCT domain
PROSITE profilePS5101713.146151193IPR010402CCT domain
SMARTSM004012.4E-4218260IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.99E-9220257No hitNo description
Gene3DG3DSA:3.30.50.101.3E-12223258IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.8E-12224258IPR000679Zinc finger, GATA-type
PROSITE patternPS003440224251IPR000679Zinc finger, GATA-type
CDDcd002022.17E-12224258No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MENSNHHSTS LYGSGAMNMQ RNPEDEEEDV PGGGGGGGEE SVDNPQIGYQ ESGGGVVTVM  60
NNGMEEASHA NLYGQGSDLT AVQGNSSADQ LTLSFQGEVY VFDSVSPDKV QAVLLLLGGY  120
EIPSGIPALA ATPIAQRGMG DFPGRSIQPH RAASLNRFRE KRKERCFDKK IRYTVRKEVA  180
LRMQRKKGQF TSAKAISDEV ASASSGWSGT PGSGQDESMQ ETLCSHCGIS SKKTPMMRRG  240
PAGPRTLCNA CGLKWANKVC *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462530.10.0PREDICTED: GATA transcription factor 28-like
SwissprotQ8H1G02e-71GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A0D2V9Q10.0A0A0D2V9Q1_GOSRA; Uncharacterized protein
TrEMBLA0A0D2W3750.0A0A0D2W375_GOSRA; Uncharacterized protein
STRINGGorai.013G055000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.27e-74ZIM-LIKE 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]