PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G054000.3
Common NameB456_013G054000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 26240.8 Da    PI: 9.4773
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G054000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.22.5e-24959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+ie +s rqvtfskRrng+lKKA+EL +LCdae  +iifsst kl+ ++s
  Gorai.013G054000.3  9 KKIEKSSSRQVTFSKRRNGLLKKAKELAILCDAELGLIIFSSTSKLHHFAS 59
                        68**********************************************986 PP
2K-box79.48.7e-27841721199
               K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         +++ + +++e+a L+++++ Lq+ +R+l+Ge+L+ Ls+k+L++Le+qLe slk++R +K ++++++  elqkk + + +en++L++k++
  Gorai.013G054000.3  84 ASELKFWEKEVASLRQQLNDLQEYHRQLMGEELSGLSIKDLRNLENQLEMSLKSVRMRKGHHIHKENLELQKKLDLICQENTELQRKVD 172
                         57789*********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.782161IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-36160IPR002100Transcription factor, MADS-box
CDDcd002652.79E-42277No hitNo description
SuperFamilySSF554553.14E-31275IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-26323IPR002100Transcription factor, MADS-box
PfamPF003199.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-263859IPR002100Transcription factor, MADS-box
PfamPF014865.0E-2385171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.23987177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGRGKIEIKK IEKSSSRQVT FSKRRNGLLK KAKELAILCD AELGLIIFSS TSKLHHFASS  60
SMKSVIERYN KYREEYHRQL LDPASELKFW EKEVASLRQQ LNDLQEYHRQ LMGEELSGLS  120
IKDLRNLENQ LEMSLKSVRM RKGHHIHKEN LELQKKLDLI CQENTELQRK VDGNGTVEAN  180
EGSKSSSHSY GFNNGYDELQ APVVDLRLSQ PQQLPDADTS YRNLRLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-21174174MEF2C
5f28_B1e-21174174MEF2C
5f28_C1e-21174174MEF2C
5f28_D1e-21174174MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at high levels in leaves, moderate levels in roots, seedlings and stems, and at low levels in flowers, pollen and siliques. Accumulates in leaf guard cells and trichomes. Also present in epidermal cells of roots (PubMed:11115127, PubMed:12837945, PubMed:12949148). Expressed in mature guard cells (PubMed:17704216). {ECO:0000269|PubMed:11115127, ECO:0000269|PubMed:12837945, ECO:0000269|PubMed:12949148, ECO:0000269|PubMed:17704216}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463559.11e-165PREDICTED: MADS-box transcription factor 23-like isoform X3
SwissprotA2RVQ55e-75AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBLA0A0D2V9P31e-164A0A0D2V9P3_GOSRA; Uncharacterized protein
STRINGGorai.013G054000.11e-162(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.18e-71AGAMOUS-like 16
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Yang K,Jiang M,Le J
    A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell.
    J Integr Plant Biol, 2014. 56(6): p. 539-49
    [PMID:24386951]