PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.013G040600.4 | ||||||||
Common Name | B456_013G040600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 292aa MW: 32742.8 Da PI: 5.9976 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 36.2 | 1.4e-11 | 260 | 284 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+r++W+peLH+rFv+a++qLGGs+ Gorai.013G040600.4 260 KQRRCWSPELHRRFVNALQQLGGSQ 284 79*********************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-9 | 259 | 284 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-7 | 260 | 282 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 292 aa Download sequence Send to blast |
MGLVPPELSL DFRPNFVPKT ITNFLREVSL IGNVSDKVSK LDTFVKGLEE EMKKIDAFKR 60 ELPLCMLLLN DAILVLKEES TQCMARNVEP VLEEFIPLKN KEEDNHSEED GSLITTKKEE 120 DCNNDCNNNM DKKNWMSSVQ LWNIDDDYCS SDHKLDTKRN DEDPCKSRGG GGRGFMPFKA 180 NLGFAVRKEE KQEIPVHGLT LSTPGINNLK EESSSTGSRS SCSRAVPFSA TNARSSFQSA 240 PPVGPSNHLQ QHQQQQTGRK QRRCWSPELH RRFVNALQQL GGSQGEEQMA T* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012464423.1 | 0.0 | PREDICTED: uncharacterized protein LOC105783481 | ||||
TrEMBL | A0A0D2TUM6 | 0.0 | A0A0D2TUM6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G040600.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37180.1 | 2e-18 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.013G040600.4 |
Publications ? help Back to Top | |||
---|---|---|---|
|