PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G040600.3

Common Name

B456_013G040600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 292aa MW: 32742.8 Da PI: 5.9976

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G040600.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	36.2	1.4e-11	260	284	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+r++W+peLH+rFv+a++qLGGs+ Gorai.013G040600.3 260 KQRRCWSPELHRRFVNALQQLGGSQ 284 79*********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.4E-9	259	284	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-7	260	282	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MGLVPPELSL DFRPNFVPKT ITNFLREVSL IGNVSDKVSK LDTFVKGLEE EMKKIDAFKR 60 ELPLCMLLLN DAILVLKEES TQCMARNVEP VLEEFIPLKN KEEDNHSEED GSLITTKKEE 120 DCNNDCNNNM DKKNWMSSVQ LWNIDDDYCS SDHKLDTKRN DEDPCKSRGG GGRGFMPFKA 180 NLGFAVRKEE KQEIPVHGLT LSTPGINNLK EESSSTGSRS SCSRAVPFSA TNARSSFQSA 240 PPVGPSNHLQ QHQQQQTGRK QRRCWSPELH RRFVNALQQL GGSQGEEQMA T*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012464423.1	0.0	PREDICTED: uncharacterized protein LOC105783481
TrEMBL	A0A0D2TUM6	0.0	A0A0D2TUM6_GOSRA; Uncharacterized protein
STRING	Gorai.013G040600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	2e-18	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G040600.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]