PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G040600.1

Common Name

B456_013G040600, LOC105783481

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 409aa MW: 45427.8 Da PI: 6.8335

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G040600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.5	6.2e-33	260	315	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Gorai.013G040600.1 260 KQRRCWSPELHRRFVNALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 315 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.494	257	317	IPR017930	Myb domain
SuperFamily	SSF46689	4.61E-18	257	318	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-29	259	318	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-27	260	315	IPR006447	Myb domain, plants
Pfam	PF00249	6.4E-8	262	313	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MGLVPPELSL DFRPNFVPKT ITNFLREVSL IGNVSDKVSK LDTFVKGLEE EMKKIDAFKR 60 ELPLCMLLLN DAILVLKEES TQCMARNVEP VLEEFIPLKN KEEDNHSEED GSLITTKKEE 120 DCNNDCNNNM DKKNWMSSVQ LWNIDDDYCS SDHKLDTKRN DEDPCKSRGG GGRGFMPFKA 180 NLGFAVRKEE KQEIPVHGLT LSTPGINNLK EESSSTGSRS SCSRAVPFSA TNARSSFQSA 240 PPVGPSNHLQ QHQQQQTGRK QRRCWSPELH RRFVNALQQL GGSQVATPKQ IRELMQVDGL 300 TNDEVKSHLQ KYRLHTRRLP ATTTTTTPAN QSGLVLGGGH AWMCQDQFGE SSKGSSSQSG 360 SPQGPLQLAT NTGGTSTTGC ESMEDDEDAK SECYSWKNHV QKPRKNNV*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MGLVPPELSL DFRPNFVPKT ITNFLREVSL IGNVSDKVSK LDTFVKGLEE EMKKIDAFKR  60
ELPLCMLLLN DAILVLKEES TQCMARNVEP VLEEFIPLKN KEEDNHSEED GSLITTKKEE  120
DCNNDCNNNM DKKNWMSSVQ LWNIDDDYCS SDHKLDTKRN DEDPCKSRGG GGRGFMPFKA  180
NLGFAVRKEE KQEIPVHGLT LSTPGINNLK EESSSTGSRS SCSRAVPFSA TNARSSFQSA  240
PPVGPSNHLQ QHQQQQTGRK QRRCWSPELH RRFVNALQQL GGSQVATPKQ IRELMQVDGL  300
TNDEVKSHLQ KYRLHTRRLP ATTTTTTPAN QSGLVLGGGH AWMCQDQFGE SSKGSSSQSG  360
SPQGPLQLAT NTGGTSTTGC ESMEDDEDAK SECYSWKNHV QKPRKNNV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-14	260	313	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-14	260	313	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-14	260	313	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-14	260	313	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-14	260	313	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-14	260	313	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-14	260	313	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-14	260	313	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-14	260	313	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-14	260	313	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-14	260	313	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-14	260	313	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964612	2e-60	JX964612.1 Gossypium hirsutum clone NBRI_TRANS-881 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012464423.1	0.0	PREDICTED: uncharacterized protein LOC105783481
TrEMBL	A0A0D2V8Z7	0.0	A0A0D2V8Z7_GOSRA; Uncharacterized protein
STRING	Gorai.013G040600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14535	10	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	8e-47	G2-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G040600.1
Entrez Gene	105783481

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]