PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G039800.4 | ||||||||
Common Name | B456_013G039800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 195aa MW: 22156.5 Da PI: 10.2695 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.4 | 4.3e-21 | 92 | 182 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 vl ps+ + ++++lp fae+h +g+ s ++l+ ++gr+W+v++ r k+g+ +++GW eF +n+L egD++vF+l +++e l+ Gorai.013G039800.4 92 VLRPSYLYRGCIMYLPSCFAEKHlSGV---SDSIKLQLPDGRQWSVRC--RYKGGKAKFSRGWYEFTLENNLGEGDVCVFELLRSREIVLK 177 7889*******************8666...336***************..667777779**********************9998888899 PP EEEE- CS B3 94 vkvfr 98 v+vfr Gorai.013G039800.4 178 VTVFR 182 99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.1E-25 | 81 | 182 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-24 | 83 | 182 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.63E-24 | 87 | 182 | No hit | No description |
PROSITE profile | PS50863 | 14.254 | 89 | 184 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.0E-22 | 89 | 184 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.7E-19 | 92 | 182 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MHLNLKNSAN EVKLRTSGSG AMKPEPKKRG RKRKFDPNVQ DSSAGREDDA DMRLRCYESA 60 SARKRTVTAE ERERAINAAK AFEPINPFCR VVLRPSYLYR GCIMYLPSCF AEKHLSGVSD 120 SIKLQLPDGR QWSVRCRYKG GKAKFSRGWY EFTLENNLGE GDVCVFELLR SREIVLKVTV 180 FRVMESGGLM HRSQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 8e-73 | 55 | 185 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 8e-73 | 55 | 185 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.3149 | 0.0 | flower|seedling| flowering |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX587993 | 5e-90 | JX587993.1 Gossypium hirsutum clone NBRI_GE22287 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012462596.1 | 1e-129 | PREDICTED: B3 domain-containing protein REM19-like | ||||
Refseq | XP_012462597.1 | 1e-129 | PREDICTED: B3 domain-containing protein REM19-like | ||||
Refseq | XP_016674964.1 | 1e-129 | PREDICTED: B3 domain-containing protein REM19-like | ||||
Refseq | XP_017619827.1 | 1e-129 | PREDICTED: B3 domain-containing protein REM19-like | ||||
Swissprot | Q8L3W1 | 4e-81 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A0D2V8U2 | 1e-142 | A0A0D2V8U2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G039800.1 | 1e-129 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-79 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G039800.4 |
Publications ? help Back to Top | |||
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