PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G039700.8
Common NameB456_013G039700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 314aa    MW: 35734.3 Da    PI: 9.7723
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G039700.8genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.31.7e-102085474
                        E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                  B3  4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74
                         +  ++ l  + l +p+kf++++g++   s   tl+ +sgr W v+l  rk  +r++l  GW  Fv+   +
  Gorai.013G039700.8 20 LM-VASILHDKKLKIPNKFVKKFGHE--LSSIATLNVPSGRLWLVEL--RKENKRVWLDCGWTVFVEYYSI 85
                        44.444555667***********965..78899**************..*****************97665 PP
2B362.95.1e-20212302498
                         E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         +l ps+v k   l +p+ fa ++ +g+      +tl+ ++g++W v++iy ++s    ++kGW eFv +n+L+egD++vF+l++++e  l+
  Gorai.013G039700.8 212 ILRPSYVYKGIFLHIPRCFALRYlNGVDG---IVTLQVSEGKKWPVRCIYGQSS--WKFSKGWAEFVLDNNLDEGDVCVFELISTKEIVLK 297
                         6789*******************866643...5***************777776..4599***********************99999999 PP

                         EEEE- CS
                  B3  94 vkvfr 98 
                         v++fr
  Gorai.013G039700.8 298 VTIFR 302
                         99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-141385IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-131385IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.38816117IPR003340B3 DNA binding domain
CDDcd100175.15E-91685No hitNo description
SMARTSM010190.01217103IPR003340B3 DNA binding domain
PfamPF023624.4E-81981IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.8E-26201302IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-25202302IPR015300DNA-binding pseudobarrel domain
CDDcd100176.55E-23207302No hitNo description
PROSITE profilePS5086314.142209304IPR003340B3 DNA binding domain
SMARTSM010191.2E-18209304IPR003340B3 DNA binding domain
PfamPF023624.2E-19212302IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSQPTGPSLP HKKSCIFYKL MVASILHDKK LKIPNKFVKK FGHELSSIAT LNVPSGRLWL  60
VELRKENKRV WLDCGWTVFV EYYSICSDHD RKKRKNSTFL DQKNNVDDLR ATVQSTRDKG  120
IQFNGVELTS AADEGGLNFL NGTQKNTKEI KQEIEPDEYK SLGKFIVKEE LPAMNSPRSD  180
HKKRRDATAE GKQIALRAAA MFKPDNPFCR VILRPSYVYK GIFLHIPRCF ALRYLNGVDG  240
IVTLQVSEGK KWPVRCIYGQ SSWKFSKGWA EFVLDNNLDE GDVCVFELIS TKEIVLKVTI  300
FRVLEDGVAV NQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-4417930519144B3 domain-containing transcription factor VRN1
4i1k_B2e-4417930519144B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016674970.10.0PREDICTED: B3 domain-containing protein REM19-like isoform X4
TrEMBLA0A0D2SL480.0A0A0D2SL48_GOSRA; Uncharacterized protein
STRINGGorai.013G039700.11e-161(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-54B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]