PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G039700.6 | ||||||||
Common Name | B456_013G039700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 308aa MW: 35017.8 Da PI: 8.7386 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.7 | 7.8e-17 | 20 | 106 | 4 | 97 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 + ++ l + l +p+kf++++g++ s tl+ +sgr W v+l rk +r++l GW Fv+ +++g f+vF++dg+s f +v Gorai.013G039700.6 20 LM-VASILHDKKLKIPNKFVKKFGHE--LSSIATLNVPSGRLWLVEL--RKENKRVWLDCGWTVFVEYYSICSGYFLVFRYDGNSHF--NV 103 44.444555667***********965..78899**************..************************************99..66 PP EEE CS B3 95 kvf 97 +++ Gorai.013G039700.6 104 HIY 106 554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-23 | 13 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.83E-22 | 13 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.943 | 16 | 109 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.58E-16 | 16 | 107 | No hit | No description |
SMART | SM01019 | 2.7E-12 | 17 | 109 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-13 | 19 | 106 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MSQPTGPSLP HKKSCIFYKL MVASILHDKK LKIPNKFVKK FGHELSSIAT LNVPSGRLWL 60 VELRKENKRV WLDCGWTVFV EYYSICSGYF LVFRYDGNSH FNVHIYNLNA SEINYQSNGL 120 NDSREPGHDK HLKDVEDGAF AQILRSQPTS SSSCFLIDDD FDECVDHDRK KRKNSTFLDQ 180 KNNVDDLRAT VQSTRDKGIQ FNGVELTSAA DEGGLNFLNG TQKNTKEIKQ EIEPDIDEYK 240 SLGKFIVKEE LPAMNSPRSD HKKRRDATAE GKQIALRAAA MFKPDNPFCR VILRPSYVYK 300 GIFLVSP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017616948.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1 | ||||
TrEMBL | A0A0D2VL15 | 0.0 | A0A0D2VL15_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G039700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 7e-35 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G039700.6 |
Publications ? help Back to Top | |||
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