PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G039700.5
Common NameB456_013G039700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 391aa    MW: 44462.7 Da    PI: 8.3072
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G039700.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.67.3e-16271051397
                         TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         ++   +p+kf++++g++   s   tl+ +sgr W v+l  rk  +r++l  GW  Fv+   +++g f+vF++dg+s f  +v+++
  Gorai.013G039700.5  27 HDKKLIPNKFVKKFGHE--LSSIATLNVPSGRLWLVEL--RKENKRVWLDCGWTVFVEYYSICSGYFLVFRYDGNSHF--NVHIY 105
                         445699********965..78899**************..************************************99..66554 PP
2B362.47.6e-20289379498
                         E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         +l ps+v k   l +p+ fa ++ +g+      +tl+ ++g++W v++iy ++s    ++kGW eFv +n+L+egD++vF+l++++e  l+
  Gorai.013G039700.5 289 ILRPSYVYKGIFLHIPRCFALRYlNGVDG---IVTLQVSEGKKWPVRCIYGQSS--WKFSKGWAEFVLDNNLDEGDVCVFELISTKEIVLK 374
                         6789*******************866643...5***************777776..4599***********************99999999 PP

                         EEEE- CS
                  B3  94 vkvfr 98 
                         v++fr
  Gorai.013G039700.5 375 VTIFR 379
                         99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-2113108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-2113108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.81515108IPR003340B3 DNA binding domain
CDDcd100171.31E-1416106No hitNo description
SMARTSM010196.9E-917108IPR003340B3 DNA binding domain
PfamPF023626.7E-1325105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-25278379IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-25279379IPR015300DNA-binding pseudobarrel domain
CDDcd100176.80E-23284379No hitNo description
PROSITE profilePS5086314.142286381IPR003340B3 DNA binding domain
SMARTSM010191.2E-18286381IPR003340B3 DNA binding domain
PfamPF023626.4E-19289379IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MSQPTGPSLP HKKSCIFYKL MVASILHDKK LIPNKFVKKF GHELSSIATL NVPSGRLWLV  60
ELRKENKRVW LDCGWTVFVE YYSICSGYFL VFRYDGNSHF NVHIYNLNAS EINYQSNGLN  120
DSREPGHDKH LKDVEDGAFA QILRSQPTSS SSCFLIDDDF DECVDHDRKK RKNSTFLDQK  180
NNVDDLRATV QSTRDKGIQF NGVELTSAAD EGGLNFLNGT QKNTKEIKQE IEPDEYKSLG  240
KFIVKEELPA MNSPRSDHKK RRDATAEGKQ IALRAAAMFK PDNPFCRVIL RPSYVYKGIF  300
LHIPRCFALR YLNGVDGIVT LQVSEGKKWP VRCIYGQSSW KFSKGWAEFV LDNNLDEGDV  360
CVFELISTKE IVLKVTIFRV LEDGVAVNQL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-4325638219144B3 domain-containing transcription factor VRN1
4i1k_B1e-4325638219144B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465039.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
RefseqXP_017616949.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A0D2WA210.0A0A0D2WA21_GOSRA; Uncharacterized protein
STRINGGorai.013G039700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-75B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]