PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G039700.4 | ||||||||
Common Name | B456_013G039700, LOC105783885 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 413aa MW: 46923.7 Da PI: 8.6309 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.9 | 2.5e-15 | 53 | 127 | 17 | 97 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +p+kf++++g++ s tl+ +sgr W v+l rk +r++l GW Fv+ +++g f+vF++dg+s f +v+++ Gorai.013G039700.4 53 KIPNKFVKKFGHE--LSSIATLNVPSGRLWLVEL--RKENKRVWLDCGWTVFVEYYSICSGYFLVFRYDGNSHF--NVHIY 127 59********965..78899**************..************************************99..66554 PP | |||||||
2 | B3 | 62.2 | 8.3e-20 | 311 | 401 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +l ps+v k l +p+ fa ++ +g+ +tl+ ++g++W v++iy ++s ++kGW eFv +n+L+egD++vF+l++++e l+ Gorai.013G039700.4 311 ILRPSYVYKGIFLHIPRCFALRYlNGVDG---IVTLQVSEGKKWPVRCIYGQSS--WKFSKGWAEFVLDNNLDEGDVCVFELISTKEIVLK 396 6789*******************866643...5***************777776..4599***********************99999999 PP EEEE- CS B3 94 vkvfr 98 v++fr Gorai.013G039700.4 397 VTIFR 401 99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-20 | 31 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.58E-13 | 39 | 128 | No hit | No description |
SMART | SM01019 | 1.1E-8 | 41 | 130 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-18 | 49 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.8E-12 | 53 | 127 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.519 | 54 | 130 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-25 | 300 | 401 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-25 | 301 | 401 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.71E-23 | 306 | 401 | No hit | No description |
PROSITE profile | PS50863 | 14.142 | 308 | 403 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-18 | 308 | 403 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.0E-19 | 311 | 401 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MSQPTGPSLP HKKSCIFYKL MVASILHDKK LLQCSKQLKT CCVVIKLNDV SKKIPNKFVK 60 KFGHELSSIA TLNVPSGRLW LVELRKENKR VWLDCGWTVF VEYYSICSGY FLVFRYDGNS 120 HFNVHIYNLN ASEINYQSNG LNDSREPGHD KHLKDVEDGA FAQILRSQPT SSSSCFLIDD 180 DFDECVDHDR KKRKNSTFLD QKNNVDDLRA TVQSTRDKGI QFNGVELTSA ADEGGLNFLN 240 GTQKNTKEIK QEIEPDEYKS LGKFIVKEEL PAMNSPRSDH KKRRDATAEG KQIALRAAAM 300 FKPDNPFCRV ILRPSYVYKG IFLHIPRCFA LRYLNGVDGI VTLQVSEGKK WPVRCIYGQS 360 SWKFSKGWAE FVLDNNLDEG DVCVFELIST KEIVLKVTIF RVLEDGVAVN QL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-43 | 278 | 404 | 19 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-43 | 278 | 404 | 19 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012465039.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2 | ||||
TrEMBL | A0A0D2VJC1 | 0.0 | A0A0D2VJC1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G039700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-72 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G039700.4 |
Entrez Gene | 105783885 |
Publications ? help Back to Top | |||
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