PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G039700.3

Common Name

B456_013G039700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 392aa MW: 44590.9 Da PI: 8.4552

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G039700.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.1	1.2e-16	21	106	5	97
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + ++ l + l +p+kf++++g++ s tl+ +sgr W v+l rk +r++l GW Fv+ +++g f+vF++dg+s f +v+ Gorai.013G039700.3 21 M-VASILHDKKLKIPNKFVKKFGHE--LSSIATLNVPSGRLWLVEL--RKENKRVWLDCGWTVFVEYYSICSGYFLVFRYDGNSHF--NVH 104 4.444555667*********965..78899**********..**********************************99..665 PP EE CS B3 96 vf 97 ++ Gorai.013G039700.3 105 IY 106 54 PP
2	B3	62.3	7.6e-20	290	380	4	98
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +l ps+v k l +p+ fa ++ +g+ +tl+ ++g++W v++iy ++s ++kGW eFv +n+L+egD++vF+l++++e l+ Gorai.013G039700.3 290 ILRPSYVYKGIFLHIPRCFALRYlNGVDG---IVTLQVSEGKKWPVRCIYGQSS--WKFSKGWAEFVLDNNLDEGDVCVFELISTKEIVLK 375 6789*****************866643...5***********777776..4599*********************99999999 PP EEEE- CS B3 94 vkvfr 98 v++fr Gorai.013G039700.3 376 VTIFR 380 99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.39E-21	13	109	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.8E-23	13	109	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.943	16	109	IPR003340	B3 DNA binding domain
CDD	cd10017	1.04E-15	16	107	No hit	No description
SMART	SM01019	2.7E-12	17	109	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.0E-13	19	106	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.5E-25	279	380	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.34E-25	280	380	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.33E-23	285	380	No hit	No description
PROSITE profile	PS50863	14.142	287	382	IPR003340	B3 DNA binding domain
SMART	SM01019	1.2E-18	287	382	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.4E-19	290	380	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MSQPTGPSLP HKKSCIFYKL MVASILHDKK LKIPNKFVKK FGHELSSIAT LNVPSGRLWL 60 VELRKENKRV WLDCGWTVFV EYYSICSGYF LVFRYDGNSH FNVHIYNLNA SEINYQSNGL 120 NDSREPGHDK HLKDVEDGAF AQILRSQPTS SSSCFLIDDD FDECVDHDRK KRKNSTFLDQ 180 KNNVDDLRAT VQSTRDKGIQ FNGVELTSAA DEGGLNFLNG TQKNTKEIKQ EIEPDEYKSL 240 GKFIVKEELP AMNSPRSDHK KRRDATAEGK QIALRAAAMF KPDNPFCRVI LRPSYVYKGI 300 FLHIPRCFAL RYLNGVDGIV TLQVSEGKKW PVRCIYGQSS WKFSKGWAEF VLDNNLDEGD 360 VCVFELISTK EIVLKVTIFR VLEDGVAVNQ L*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MSQPTGPSLP HKKSCIFYKL MVASILHDKK LKIPNKFVKK FGHELSSIAT LNVPSGRLWL  60
VELRKENKRV WLDCGWTVFV EYYSICSGYF LVFRYDGNSH FNVHIYNLNA SEINYQSNGL  120
NDSREPGHDK HLKDVEDGAF AQILRSQPTS SSSCFLIDDD FDECVDHDRK KRKNSTFLDQ  180
KNNVDDLRAT VQSTRDKGIQ FNGVELTSAA DEGGLNFLNG TQKNTKEIKQ EIEPDEYKSL  240
GKFIVKEELP AMNSPRSDHK KRRDATAEGK QIALRAAAMF KPDNPFCRVI LRPSYVYKGI  300
FLHIPRCFAL RYLNGVDGIV TLQVSEGKKW PVRCIYGQSS WKFSKGWAEF VLDNNLDEGD  360
VCVFELISTK EIVLKVTIFR VLEDGVAVNQ L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4i1k_A	1e-43	257	383	19	144	B3 domain-containing transcription factor VRN1
4i1k_B	1e-43	257	383	19	144	B3 domain-containing transcription factor VRN1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017616949.1	0.0	PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBL	A0A0D2SL43	0.0	A0A0D2SL43_GOSRA; Uncharacterized protein
STRING	Gorai.013G039700.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	3e-77	B3 family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G039700.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]