PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G039500.1
Common NameB456_013G039500, LOC105781297
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 152aa    MW: 17508.4 Da    PI: 10.5384
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G039500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.81.2e-10231081094
                         HHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..E CS
                  B3  10 vlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld.grsefelv 93 
                         v+   rl++p k ++ +   +   e++++    d  g++W + l+   ++ r    vl++GW  +v+a+gL+ +D +v++ d ++ +++ +
  Gorai.013G039500.1  23 VG--VRLSFPMKALKVFqflE--GENKMEFEAADGIGKRWIFGLSK--RKARhpkPVLSSGWLAYVRAKGLQIKDRFVLYGDlDNLSTKKR 107
                         44..36899999997778553..33566777778888*******54..44444589************************65333444444 PP

                         E CS
                  B3  94 v 94 
                         +
  Gorai.013G039500.1 108 F 108
                         4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-139114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-91098IPR015300DNA-binding pseudobarrel domain
CDDcd100176.88E-1113111No hitNo description
PfamPF023621.6E-826106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MGVPPLYSET NEIFSKDLSE TDVGVRLSFP MKALKVFQFL EGENKMEFEA ADGIGKRWIF  60
GLSKRKARHP KPVLSSGWLA YVRAKGLQIK DRFVLYGDLD NLSTKKRFRV RAQRKVRRPI  120
KLFGKEIHVE EVWVDVEELE GLKREVSRSI L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461286.11e-106PREDICTED: uncharacterized protein LOC105781297
TrEMBLA0A0D2S8141e-104A0A0D2S814_GOSRA; Uncharacterized protein
STRINGGorai.013G039500.11e-105(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2224545
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]