PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G039300.2

Common Name

B456_013G039300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 351aa MW: 39193.2 Da PI: 8.6556

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G039300.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.3	3.3e-08	216	262	17	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 A+rsR RK+++i+eLe+ v++L+ae ++ ele l+++ l +e+ Gorai.013G039300.2 216 AQRSRVRKLQYIAELERNVQALQAEGSEVSAELEFLNQQNLILSMEN 262 89***********************************9998887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0018	205	264	IPR004827	Basic-leucine zipper domain
CDD	cd14703	7.63E-16	207	255	No hit	No description
SuperFamily	SSF57959	5.63E-6	216	258	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.9E-5	216	258	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MANSKGSTNI RNLMFSGKHA LLPPKSPFPT VASTYNDSAP NNVIGSKAIQ KPREGSTYHQ 60 RTSSESLLIE EQPSWLDDLL NEPETPVRRG GHRRSSSDSF AYIDDFDHHN CKDGRLNSFH 120 ADVNLVKQKH RAWDSSLNVV THPSGLPSLR ENTFVQSLGS CAPQELEQAQ STANGKQDST 180 KSAPIDAKAS SEKKDNSHAK SSASDSDTKR AKQQFAQRSR VRKLQYIAEL ERNVQALQAE 240 GSEVSAELEF LNQQNLILSM ENKALTQRLE SLAQEQAIKY LEQEVLEREI GRLRVLYQQQ 300 QNQQQPQQKQ QSSSHRRSSS RDLDSQFANL SVKEKDTSSS HDTVTGPLRI *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MANSKGSTNI RNLMFSGKHA LLPPKSPFPT VASTYNDSAP NNVIGSKAIQ KPREGSTYHQ  60
RTSSESLLIE EQPSWLDDLL NEPETPVRRG GHRRSSSDSF AYIDDFDHHN CKDGRLNSFH  120
ADVNLVKQKH RAWDSSLNVV THPSGLPSLR ENTFVQSLGS CAPQELEQAQ STANGKQDST  180
KSAPIDAKAS SEKKDNSHAK SSASDSDTKR AKQQFAQRSR VRKLQYIAEL ERNVQALQAE  240
GSEVSAELEF LNQQNLILSM ENKALTQRLE SLAQEQAIKY LEQEVLEREI GRLRVLYQQQ  300
QNQQQPQQKQ QSSSHRRSSS RDLDSQFANL SVKEKDTSSS HDTVTGPLRI *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012463962.1	0.0	PREDICTED: uncharacterized protein At4g06598-like
Swissprot	Q8W3M7	5e-72	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	A0A0D2W2M5	0.0	A0A0D2W2M5_GOSRA; Uncharacterized protein
STRING	Gorai.013G039300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	2e-93	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G039300.2

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]