PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G038100.3 | ||||||||
Common Name | B456_013G038100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 315aa MW: 35705.1 Da PI: 5.6608 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.8 | 6.9e-12 | 142 | 195 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ hn+ Er RR ++ a+ L llP++s +++k+ s a i +AveYI +L Gorai.013G038100.3 142 KKQEHNAKERIRRMKLHAAYLALGALLPSDSTGSKKRKSTALIIDRAVEYIPEL 195 6899*************************85555555**************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.8E-12 | 137 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.9E-10 | 141 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.443 | 141 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-9 | 142 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-6 | 147 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MSSLHLENLF SIPEATDEYL WPLTQDNKDD DYTIEDNART GDQLGTTSKF ILESVDHNIV 60 GESMESILDY PIDVSLSAPL EDLDDIDLVP HESSSRQLPS TYQETGDAHI NAKRISSKTR 120 GRNHRFKQGL NMEDNGEGTT MKKQEHNAKE RIRRMKLHAA YLALGALLPS DSTGSKKRKS 180 TALIIDRAVE YIPELEKEIE KLTLRKNDML STIKNKKSCA VLNHFQLRQP SVSVHEIKQG 240 EFIVQICTQE YPDCSFLNLL HNVEEEEGIC IISASTHQVS DHGHCYHLHI QMHERLDGEN 300 HIASLREKLM YSQG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX614544 | 1e-155 | JX614544.1 Gossypium hirsutum clone NBRI_GE58013 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012465252.1 | 0.0 | PREDICTED: transcription factor bHLH101 isoform X3 | ||||
TrEMBL | A0A0D2TUB5 | 0.0 | A0A0D2TUB5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G038100.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71200.1 | 1e-20 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G038100.3 |
Publications ? help Back to Top | |||
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