PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G036400.2
Common NameB456_013G036400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 388aa    MW: 42617.9 Da    PI: 5.791
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G036400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.94.9e-10236283455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Gorai.013G036400.2 236 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 283
                         8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.87E-10230287No hitNo description
SuperFamilySSF474592.62E-15230290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15232287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.618232282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-7236283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9238288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MNTALPEMLQ CSDLTVLERQ RDRLKWQEEQ FQQQQQQSYF SELSCGAFSS QTNHVQGFQG  60
GFMGGASGDS VLSDMVMARQ VKPDPGLESP WPELGKVDMA AMGFGPCGYG NGPSFDMNHA  120
ISRTSSCPPA VAATKAVEVK VNSEKMASAV DKESFKKRKA EKLQNTKVVA ENESKRIKSC  180
EDEGEESKIT GPNTNKSSNN KKEASGDASK ENSKVSEVQK PDFIHVRARR GQATDSHSLA  240
ERVRREKISE RMKYLQDLVP GCNKITGKAG MLDEIINYVQ SLQRQVEFNP IQQVVPCCGV  300
EMGINSPDMT LRRTISAPVS IPDASFLDSS CLTMHQCSAM QQIQPTATWD VELQNLYNVA  360
FDQGRSTPPF PSQPFAGSIE ASDLKEI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5322580.0EU532258.1 Gossypium barbadense clone I8-1 ISSR marker genomic sequence.
GenBankEU5323090.0EU532309.1 Gossypium barbadense clone I11-11 ISSR marker genomic sequence.
GenBankEU5323160.0EU532316.1 Gossypium barbadense clone I11-19 ISSR marker genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464358.10.0PREDICTED: transcription factor HBI1-like
TrEMBLA0A0D2TUJ20.0A0A0D2TUJ2_GOSRA; Uncharacterized protein
STRINGGorai.013G036400.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.15e-53bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]