PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G033500.1

Common Name

B456_013G033500, LOC105782017

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SRS

Protein Properties

Length: 202aa MW: 22728.7 Da PI: 9.1307

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G033500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	86.7	5.6e-27	11	64	2	55
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqq 55 r+g+++C+dCGn+akk+C ++RCRtCC+s+g++C+th+kstWvpa++r + q Gorai.013G033500.1 11 RQGSTRCEDCGNKAKKECGFTRCRTCCRSKGYQCQTHIKSTWVPAYRRIRQNPQ 64 57899****************************************988654333 PP
2	DUF702	78.5	1.8e-24	70	134	89	154
DUF702 89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 t+l ++++++ le+ ++P+ev s+a f+cvrvssv+d+++e+aY+t+v+i G vfkGiLydqG+++ Gorai.013G033500.1 70 TRL-RQNPSSGLEVGKFPAEVISPATFQCVRVSSVEDADDEYAYRTSVNIEGRVFKGILYDQGPHH 134 443.445677899999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.0E-23	14	66	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.8E-25	17	58	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	8.3E-22	77	133	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	1.3E-22	84	132	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MNELRRMMML RQGSTRCEDC GNKAKKECGF TRCRTCCRSK GYQCQTHIKS TWVPAYRRIR 60 QNPQISRNPT RLRQNPSSGL EVGKFPAEVI SPATFQCVRV SSVEDADDEY AYRTSVNIEG 120 RVFKGILYDQ GPHHSLGESS SRDQTHLQQQ QPNQIIAADP LTMATTTTSA TVETLLPFAY 180 ASPFNAFMSP STQFFLHQPK P*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461973.1	1e-151	PREDICTED: protein SHI RELATED SEQUENCE 3
TrEMBL	A0A0D2TUG3	1e-150	A0A0D2TUG3_GOSRA; Uncharacterized protein
STRING	Gorai.013G033500.1	1e-151	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9188	26	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19790.2	1e-49	SHI-related sequence 7

Link Out ? help Back to Top
Phytozome	Gorai.013G033500.1
Entrez Gene	105782017

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]