PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G032900.1

Common Name

B456_013G032900, LOC105783009

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 313aa MW: 34089.9 Da PI: 7.1272

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G032900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	56.9	2.8e-18	230	263	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C++ kTp+WR gp g ktLCnaCG++y++ + Gorai.013G032900.1 230 CSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGR 263 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	3.0E-78	4	311	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	2.7E-14	224	278	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	7.6E-14	226	287	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.6E-14	228	261	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	11.332	228	260	IPR000679	Zinc finger, GATA-type
CDD	cd00202	5.37E-14	229	278	No hit	No description
PROSITE pattern	PS00344	0	230	255	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	3.8E-16	230	263	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MDLRALKSSV RELTMQNTHH VFDDSLVMNV MNGAVAGEDF SIDCFLDFNN GEFEEGSVEE 60 EEKNSVSTSY QLRVADDDSN SNSTSFTLSV PNDEIAGLEW VSHFVDDSVP EIPLPCPVFK 120 QETDNHAGTR FEAETGPVFV KTPSFSSSVP SKARSKRSKP TVPTWSVGSL PISESSSSTA 180 SSSSTCSGSS MTSTELANGF RVPPTKKQKK KPVAVQGSGL SSGNPFQRRC SHCQVQKTPQ 240 WRTGPLGAKT LCNACGVRYK SGRLFPEYRP ACSPTFSGDL HSNSHRKVLE MRKRKELTVN 300 DSVESTRLVP SF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.594	1e-155	seedling

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012463611.1	0.0	PREDICTED: GATA transcription factor 5-like
TrEMBL	A0A0D2V9Y7	0.0	A0A0D2V9Y7_GOSRA; GATA transcription factor
STRING	Gorai.013G032900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5739	26	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66320.2	5e-50	GATA transcription factor 5

Link Out ? help Back to Top
Phytozome	Gorai.013G032900.1
Entrez Gene	105783009

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]