PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G026300.4

Common Name

B456_013G026300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 1431aa MW: 154855 Da PI: 6.388

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G026300.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.2	8.8e-09	652	693	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e++ d + +G++ +++Ia + ++t +c+++++k Gorai.013G026300.4 652 PWTSEEKEIFMDKLAAFGKD-FRKIATFLD-HKTTADCVEFYYK 693 8***************99.*****.*********98 PP
2	Myb_DNA-binding	30.5	8.5e-10	871	910	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++av +G++ ++ I+r++ +R++ qck ++ Gorai.013G026300.4 871 WTDEEKSVFIQAVSSYGKD-FAMISRCVR-TRSRDQCKVFFS 910 ***************99.*****.******8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.72E-14	636	697	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.53	648	699	IPR017884	SANT domain
SMART	SM00717	1.6E-7	649	697	IPR001005	SANT/Myb domain
Pfam	PF00249	7.3E-6	651	693	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-5	651	697	IPR009057	Homeodomain-like
PROSITE profile	PS51293	11.174	866	917	IPR017884	SANT domain
SMART	SM00717	1.0E-7	867	915	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.73E-10	869	917	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.8E-6	870	911	IPR009057	Homeodomain-like
Pfam	PF00249	3.2E-7	871	910	IPR001005	SANT/Myb domain
CDD	cd00167	6.74E-7	871	909	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1431 aa Download sequence Send to blast
MFTYPSRTHS DFVNTWNQLQ KDHHDNRTCG VNGLGTGQRC ERENSLGSVD WKPLKWSRSG 60 SLSSWGSGFS HSSSSKSLGG VDSGEAKLEL HQKNLAPVQS PSGDAAACVT SAPPSDETTS 120 RKKPRLGWGE GLAKFEKKKD GGPDTSINSG GAAISLCNTE PNTSLNSNLV DKSPRVLGFS 180 DCSSPATPSS VACSSSPGVE EKSFGKAANI DNDVNNLCGS PSFGSQNQLE GSSFSLEKLD 240 INSIINMGSS LIDLLQSDEP STMDSSFVQS TAINKLLLWK GDILKALEMT ESEIESLETE 300 LKSSKDDPGR RCQCPATSSS LPVRENGKSC EEQEAASSMI PQPAPLKIDP SNDVLEVLQE 360 ANADIKDGVI DSPGTATSDF MLSSSLEKAE SLCDVVKAQD CSGNSSSAQL KTMEEVILAT 420 DSCNEEAAAV ISGEGSVLVK IDNEAHVPES SNSDAGGENM TCDVILTTNK ELANRSSLVF 480 KKLFPKDQYS IEISEISNAV RGQISSLIRE KIAMRKRHLR FKERVLTLKF KAFQYAWKED 540 MLSPAMRKYW AKSQKKYELS LRSTYGGYQK HRSSSRSRVA SSAGNLVLEP TAEMINFTSK 600 LLLDSHVKLY RNALKMPALI LDEQEQLSRF ISSNGLVEDP CAIEKERALI NPWTSEEKEI 660 FMDKLAAFGK DFRKIATFLD HKTTADCVEF YYKNHKSECF KKTKKKLDLT KQGKSSANTY 720 LLTSGKKWSK EFNAASIDVL GSASVIATHA ESGMQKHQTS SSRIFFGGRY SKISRADDRI 780 ADRLSSFDII GNDRETAAAD VLAGICGSLS SEAMSSCITS SLDPGESFHR DWKCHKVDSL 840 LKRRSTSNVA QNVDDGTCSD ESCGEMDPAD WTDEEKSVFI QAVSSYGKDF AMISRCVRTR 900 SRDQCKVFFS KARKCLGLDL IDPRTRNLGT PMSDDANGGG SDAEDACVLE RLVVSSDKLG 960 SKPEDLPSNI VCTNMDERNP TSKPILPTDL NVPDENNRKL VDHRDSEAVQ TVDSDAGLAE 1020 LISECSVDMN IDSKAGSLQV QKSFVALGNL NAGRDVTEQG VSVAVSASLG AAAHPCTPSL 1080 DSVAVSKPAT SLYENDTKCS AETSSQSICR IDSNKASDGS VGKNSCSGFS LSAKGLHQIP 1140 PDLDSAKKPS VSNNSSANGS ALHDSDGLRC EKICNLGRLS STLDYKENEA KQAQKSVRED 1200 ESGRLSGKTS VNVTEPHRIL RGYPLQVSTL KEMNGDVKCL ATSKRGSAGP CLAQECYLQK 1260 CNSSKSAAEL PLLVENLEQA KDRPKSHCRI SDTENPGRNG NVKLFGQILN SSSRDDKVSH 1320 FSKQNTEPSN SKPIGNNVDG NSKFDANNHV VENVPKRSYG FSDGKRIQTG LSSLPDSSIL 1380 MAKYPSAFAN YPPTSSSQME QQALQTVVHG TDRTLNGVSF PLKGNKQQQR *

Sequence ? help Back to Top

Protein Sequence Length: 1431 aa Download sequence Send to blast

MFTYPSRTHS DFVNTWNQLQ KDHHDNRTCG VNGLGTGQRC ERENSLGSVD WKPLKWSRSG  60
SLSSWGSGFS HSSSSKSLGG VDSGEAKLEL HQKNLAPVQS PSGDAAACVT SAPPSDETTS  120
RKKPRLGWGE GLAKFEKKKD GGPDTSINSG GAAISLCNTE PNTSLNSNLV DKSPRVLGFS  180
DCSSPATPSS VACSSSPGVE EKSFGKAANI DNDVNNLCGS PSFGSQNQLE GSSFSLEKLD  240
INSIINMGSS LIDLLQSDEP STMDSSFVQS TAINKLLLWK GDILKALEMT ESEIESLETE  300
LKSSKDDPGR RCQCPATSSS LPVRENGKSC EEQEAASSMI PQPAPLKIDP SNDVLEVLQE  360
ANADIKDGVI DSPGTATSDF MLSSSLEKAE SLCDVVKAQD CSGNSSSAQL KTMEEVILAT  420
DSCNEEAAAV ISGEGSVLVK IDNEAHVPES SNSDAGGENM TCDVILTTNK ELANRSSLVF  480
KKLFPKDQYS IEISEISNAV RGQISSLIRE KIAMRKRHLR FKERVLTLKF KAFQYAWKED  540
MLSPAMRKYW AKSQKKYELS LRSTYGGYQK HRSSSRSRVA SSAGNLVLEP TAEMINFTSK  600
LLLDSHVKLY RNALKMPALI LDEQEQLSRF ISSNGLVEDP CAIEKERALI NPWTSEEKEI  660
FMDKLAAFGK DFRKIATFLD HKTTADCVEF YYKNHKSECF KKTKKKLDLT KQGKSSANTY  720
LLTSGKKWSK EFNAASIDVL GSASVIATHA ESGMQKHQTS SSRIFFGGRY SKISRADDRI  780
ADRLSSFDII GNDRETAAAD VLAGICGSLS SEAMSSCITS SLDPGESFHR DWKCHKVDSL  840
LKRRSTSNVA QNVDDGTCSD ESCGEMDPAD WTDEEKSVFI QAVSSYGKDF AMISRCVRTR  900
SRDQCKVFFS KARKCLGLDL IDPRTRNLGT PMSDDANGGG SDAEDACVLE RLVVSSDKLG  960
SKPEDLPSNI VCTNMDERNP TSKPILPTDL NVPDENNRKL VDHRDSEAVQ TVDSDAGLAE  1020
LISECSVDMN IDSKAGSLQV QKSFVALGNL NAGRDVTEQG VSVAVSASLG AAAHPCTPSL  1080
DSVAVSKPAT SLYENDTKCS AETSSQSICR IDSNKASDGS VGKNSCSGFS LSAKGLHQIP  1140
PDLDSAKKPS VSNNSSANGS ALHDSDGLRC EKICNLGRLS STLDYKENEA KQAQKSVRED  1200
ESGRLSGKTS VNVTEPHRIL RGYPLQVSTL KEMNGDVKCL ATSKRGSAGP CLAQECYLQK  1260
CNSSKSAAEL PLLVENLEQA KDRPKSHCRI SDTENPGRNG NVKLFGQILN SSSRDDKVSH  1320
FSKQNTEPSN SKPIGNNVDG NSKFDANNHV VENVPKRSYG FSDGKRIQTG LSSLPDSSIL  1380
MAKYPSAFAN YPPTSSSQME QQALQTVVHG TDRTLNGVSF PLKGNKQQQR *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-17	611	701	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-17	611	701	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578805	0.0	JX578805.1 Gossypium hirsutum clone NBRI_GE10901 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016704621.1	0.0	PREDICTED: uncharacterized protein LOC107919754
TrEMBL	A0A0D2V9N8	0.0	A0A0D2V9N8_GOSRA; Uncharacterized protein
STRING	Gorai.013G026300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-171	MYB family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G026300.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]