PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G026300.1

Common Name

B456_013G026300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 1588aa MW: 173056 Da PI: 6.708

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G026300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.1	9.9e-09	809	850	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e++ d + +G++ +++Ia + ++t +c+++++k Gorai.013G026300.1 809 PWTSEEKEIFMDKLAAFGKD-FRKIATFLD-HKTTADCVEFYYK 850 8***************99.*****.*********98 PP
2	Myb_DNA-binding	30.3	9.5e-10	1028	1067	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++av +G++ ++ I+r++ +R++ qck ++ Gorai.013G026300.1 1028 WTDEEKSVFIQAVSSYGKD-FAMISRCVR-TRSRDQCKVFFS 1067 ***************99.*****.******8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.05E-13	793	854	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.53	805	856	IPR017884	SANT domain
SMART	SM00717	1.6E-7	806	854	IPR001005	SANT/Myb domain
Pfam	PF00249	8.2E-6	808	850	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-5	808	854	IPR009057	Homeodomain-like
PROSITE profile	PS51293	11.174	1023	1074	IPR017884	SANT domain
SMART	SM00717	1.0E-7	1024	1072	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.04E-10	1026	1074	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.4E-6	1027	1068	IPR009057	Homeodomain-like
Pfam	PF00249	3.6E-7	1028	1067	IPR001005	SANT/Myb domain
CDD	cd00167	7.59E-7	1028	1066	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1588 aa Download sequence Send to blast
MPQEPLPWDR KDIYKDRKHE RAELQPPPLL AARWREASSM SSYQHGSFRE FARWGSADFH 60 RPPGHGKQGN WHLFPEDIGG HGYVPWRSSD KILDGETYRQ SVSRGDGKYG RSYSRDNNRG 120 SYNQRDWRGH SLETSNGSPN TSVRPHDVNN EQRSVDDMFT YPSRTHSDFV NTWNQLQKDH 180 HDNRTCGVNG LGTGQRCERE NSLGSVDWKP LKWSRSGSLS SWGSGFSHSS SSKSLGGVDS 240 GEAKLELHQK NLAPVQSPSG DAAACVTSAP PSDETTSRKK PRLGWGEGLA KFEKKKDGGP 300 DTSINSGGAA ISLCNTEPNT SLNSNLVDKS PRVLGFSDCS SPATPSSVAC SSSPGVEEKS 360 FGKAANIDND VNNLCGSPSF GSQNQLEGSS FSLEKLDINS IINMGSSLID LLQSDEPSTM 420 DSSFVQSTAI NKLLLWKGDI LKALEMTESE IESLETELKS SKDDPGRRCQ CPATSSSLPV 480 RENGKSCEEQ EAASSMIPQP APLKIDPSND VLEVLQEANA DIKDGVIDSP GTATSDFMLS 540 SSLEKAESLC DVVKAQDCSG NSSSAQLKTM EEVILATDSC NEEAAAVISG EGSVLVKIDN 600 EAHVPESSNS DAGGENMTCD VILTTNKELA NRSSLVFKKL FPKDQYSIEI SEISNAVRGQ 660 ISSLIREKIA MRKRHLRFKE RVLTLKFKAF QYAWKEDMLS PAMRKYWAKS QKKYELSLRS 720 TYGGYQKHRS SSRSRVASSA GNLVLEPTAE MINFTSKLLL DSHVKLYRNA LKMPALILDE 780 QEQLSRFISS NGLVEDPCAI EKERALINPW TSEEKEIFMD KLAAFGKDFR KIATFLDHKT 840 TADCVEFYYK NHKSECFKKT KKKLDLTKQG KSSANTYLLT SGKKWSKEFN AASIDVLGSA 900 SVIATHAESG MQKHQTSSSR IFFGGRYSKI SRADDRIADR LSSFDIIGND RETAAADVLA 960 GICGSLSSEA MSSCITSSLD PGESFHRDWK CHKVDSLLKR RSTSNVAQNV DDGTCSDESC 1020 GEMDPADWTD EEKSVFIQAV SSYGKDFAMI SRCVRTRSRD QCKVFFSKAR KCLGLDLIDP 1080 RTRNLGTPMS DDANGGGSDA EDACVLERLV VSSDKLGSKP EDLPSNIVCT NMDERNPTSK 1140 PILPTDLNVP DENNRKLVDH RDSEAVQTVD SDAGLAELIS ECSVDMNIDS KAGSLQVQKS 1200 FVALGNLNAG RDVTEQGVSV AVSASLGAAA HPCTPSLDSV AVSKPATSLY ENDTKCSAET 1260 SSQSICRIDS NKASDGSVGK NSCSGFSLSA KGLHQIPPDL DSAKKPSVSN NSSANGSALH 1320 DSDGLRCEKI CNLGRLSSTL DYKENEAKQA QKSVREDESG RLSGKTSVNV TEPHRILRGY 1380 PLQVSTLKEM NGDVKCLATS KRGSAGPCLA QECYLQKCNS SKSAAELPLL VENLEQAKDR 1440 PKSHCRISDT ENPGRNGNVK LFGQILNSSS RDDKVSHFSK QNTEPSNSKP IGNNVDGNSK 1500 FDANNHVVEN VPKRSYGFSD GKRIQTGLSS LPDSSILMAK YPSAFANYPP TSSSQMEQQA 1560 LQTVVHGTDR TLNGVSFPLK GNKQQQR*

Sequence ? help Back to Top

Protein Sequence Length: 1588 aa Download sequence Send to blast

MPQEPLPWDR KDIYKDRKHE RAELQPPPLL AARWREASSM SSYQHGSFRE FARWGSADFH  60
RPPGHGKQGN WHLFPEDIGG HGYVPWRSSD KILDGETYRQ SVSRGDGKYG RSYSRDNNRG  120
SYNQRDWRGH SLETSNGSPN TSVRPHDVNN EQRSVDDMFT YPSRTHSDFV NTWNQLQKDH  180
HDNRTCGVNG LGTGQRCERE NSLGSVDWKP LKWSRSGSLS SWGSGFSHSS SSKSLGGVDS  240
GEAKLELHQK NLAPVQSPSG DAAACVTSAP PSDETTSRKK PRLGWGEGLA KFEKKKDGGP  300
DTSINSGGAA ISLCNTEPNT SLNSNLVDKS PRVLGFSDCS SPATPSSVAC SSSPGVEEKS  360
FGKAANIDND VNNLCGSPSF GSQNQLEGSS FSLEKLDINS IINMGSSLID LLQSDEPSTM  420
DSSFVQSTAI NKLLLWKGDI LKALEMTESE IESLETELKS SKDDPGRRCQ CPATSSSLPV  480
RENGKSCEEQ EAASSMIPQP APLKIDPSND VLEVLQEANA DIKDGVIDSP GTATSDFMLS  540
SSLEKAESLC DVVKAQDCSG NSSSAQLKTM EEVILATDSC NEEAAAVISG EGSVLVKIDN  600
EAHVPESSNS DAGGENMTCD VILTTNKELA NRSSLVFKKL FPKDQYSIEI SEISNAVRGQ  660
ISSLIREKIA MRKRHLRFKE RVLTLKFKAF QYAWKEDMLS PAMRKYWAKS QKKYELSLRS  720
TYGGYQKHRS SSRSRVASSA GNLVLEPTAE MINFTSKLLL DSHVKLYRNA LKMPALILDE  780
QEQLSRFISS NGLVEDPCAI EKERALINPW TSEEKEIFMD KLAAFGKDFR KIATFLDHKT  840
TADCVEFYYK NHKSECFKKT KKKLDLTKQG KSSANTYLLT SGKKWSKEFN AASIDVLGSA  900
SVIATHAESG MQKHQTSSSR IFFGGRYSKI SRADDRIADR LSSFDIIGND RETAAADVLA  960
GICGSLSSEA MSSCITSSLD PGESFHRDWK CHKVDSLLKR RSTSNVAQNV DDGTCSDESC  1020
GEMDPADWTD EEKSVFIQAV SSYGKDFAMI SRCVRTRSRD QCKVFFSKAR KCLGLDLIDP  1080
RTRNLGTPMS DDANGGGSDA EDACVLERLV VSSDKLGSKP EDLPSNIVCT NMDERNPTSK  1140
PILPTDLNVP DENNRKLVDH RDSEAVQTVD SDAGLAELIS ECSVDMNIDS KAGSLQVQKS  1200
FVALGNLNAG RDVTEQGVSV AVSASLGAAA HPCTPSLDSV AVSKPATSLY ENDTKCSAET  1260
SSQSICRIDS NKASDGSVGK NSCSGFSLSA KGLHQIPPDL DSAKKPSVSN NSSANGSALH  1320
DSDGLRCEKI CNLGRLSSTL DYKENEAKQA QKSVREDESG RLSGKTSVNV TEPHRILRGY  1380
PLQVSTLKEM NGDVKCLATS KRGSAGPCLA QECYLQKCNS SKSAAELPLL VENLEQAKDR  1440
PKSHCRISDT ENPGRNGNVK LFGQILNSSS RDDKVSHFSK QNTEPSNSKP IGNNVDGNSK  1500
FDANNHVVEN VPKRSYGFSD GKRIQTGLSS LPDSSILMAK YPSAFANYPP TSSSQMEQQA  1560
LQTVVHGTDR TLNGVSFPLK GNKQQQR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-17	768	858	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-17	768	858	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578805	0.0	JX578805.1 Gossypium hirsutum clone NBRI_GE10901 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016704621.1	0.0	PREDICTED: uncharacterized protein LOC107919754
TrEMBL	A0A0D2S767	0.0	A0A0D2S767_GOSRA; Uncharacterized protein
STRING	Gorai.013G026300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5260	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	0.0	MYB family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G026300.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]