PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G022500.1

Common Name

B456_013G022500, LOC105784506

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 280aa MW: 30697.7 Da PI: 9.1398

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G022500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.7	2.6e-38	69	129	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +ekalkcprC+st+tkfCy+nnyslsqPryfCk+C+ryWt+GGalrnvP+Ggg+r nk+s+ Gorai.013G022500.1 69 PEKALKCPRCESTHTKFCYFNNYSLSQPRYFCKTCKRYWTRGGALRNVPIGGGCRTNKRSK 129 7899******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-31	53	127	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-32	71	127	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.463	73	127	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	75	111	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MVFSFVPLID PLNWQQPPTH QQDQVFTKDN HHHIHNPLLP PPPPAGGGVG INRLGSMAER 60 ARLANMQKPE KALKCPRCES THTKFCYFNN YSLSQPRYFC KTCKRYWTRG GALRNVPIGG 120 GCRTNKRSKG SKPTKSPSIG QMNPTPPQLP LLLHPLHYLG DYISVGTRAS SNMEFQIGNS 180 SHGDGSMLTN GLVQQFPFLT GLETPTGLYP LGSEGVEASS YGVHHQLRSK PLESWIAQLE 240 AVSDQYWAGG GGGHGGDAWT DLSGDFVYKS FLPPNPVQY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465858.1	0.0	PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBL	A0A0D2V9E6	0.0	A0A0D2V9E6_GOSRA; Uncharacterized protein
STRING	Gorai.013G022500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24290	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	9e-46	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	Gorai.013G022500.1
Entrez Gene	105784506

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]