PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G018200.1
Common NameB456_013G018200, LOC105781827
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 118aa    MW: 13758 Da    PI: 9.9782
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G018200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.42.7e-18590185
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkld 85
                        f kvl  s +  ++rl +p + + ++   + ++  +  ++d++g++We++++ rkk+ +   v +kGW++Fvk++gL++gD vvF+ d
  Gorai.013G018200.1  5 FSKVL--SPTDIEHRLAVPSEILWAFeFDQARRCADFEVKDKHGQTWEFRCSTRKKDFHpkPVVSKGWRKFVKDKGLQAGDKVVFYKD 90
                        67788..55666678*******9999855667888****************877777669999***********************43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-20296IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.1523105IPR003340B3 DNA binding domain
CDDcd100171.33E-19499No hitNo description
SuperFamilySSF1019367.98E-18494IPR015300DNA-binding pseudobarrel domain
PfamPF023623.6E-15590IPR003340B3 DNA binding domain
SMARTSM010199.0E-95105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MKQLFSKVLS PTDIEHRLAV PSEILWAFEF DQARRCADFE VKDKHGQTWE FRCSTRKKDF  60
HPKPVVSKGW RKFVKDKGLQ AGDKVVFYKD VEGDSSYKII TMKKVFKLFG EEVWLPS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461799.12e-81PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLA0A0D2V8005e-80A0A0D2V800_GOSRA; Uncharacterized protein
TrEMBLA0A2P5SHU35e-80A0A2P5SHU3_GOSBA; Uncharacterized protein
STRINGGorai.013G018200.19e-81(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2206445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.12e-12B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]