PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G017600.1 | ||||||||
Common Name | B456_013G017600, LOC105782432 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 675aa MW: 73780.9 Da PI: 7.0263 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.9 | 2.7e-06 | 269 | 289 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f++ G C+ Gd C +aHg Gorai.013G017600.1 269 PCLEFRK-GACPKGDACDYAHG 289 8999***.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 3.9E-17 | 60 | 198 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 2.02E-15 | 73 | 153 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.937 | 76 | 154 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0014 | 76 | 106 | IPR002110 | Ankyrin repeat |
Pfam | PF13637 | 2.0E-9 | 77 | 135 | No hit | No description |
CDD | cd00204 | 1.00E-14 | 78 | 193 | No hit | No description |
SMART | SM00248 | 9.2E-4 | 111 | 143 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.968 | 111 | 146 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50103 | 12.831 | 264 | 291 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-4 | 264 | 290 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 269 | 290 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.8E-4 | 295 | 328 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 72 | 299 | 322 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 675 aa Download sequence Send to blast |
MCCGSKSELV PSNFTMEGEL QEHKIGALCK CSLLLELAAS NDLVAFKNEV EEKGLDLGEA 60 SLWYGRRIWS RKMGFEERTP LIIAAMFGSV DVLKYIIGSG KIDVNDACGT DGVTALHCAV 120 AGGSDSSVEI VKLLLDASAD ANRVDANGSK PIDLVLPALK SLSSSKRKVI ELLLKGVSGC 180 VLNEKAESEK TVLPQMFKEG SEKKEYPIDV SLPDINNGIY GTDDFRMYTF KVKPCSRAYS 240 HDWTECPFVH PGENARRRDP RKYPYSCVPC LEFRKGACPK GDACDYAHGI FESWLHPSQY 300 RTRLCKDEIA CARKVCFFAH KLEELRPVNA STGSAMPSPR SAVINAADMA NLSPLALGSS 360 ALPLPTTSTP PMSPLAVASS PKSGGLWHKQ VNLTPPTLQL PGSRLKTAFN ARDFDLEMQL 420 LALENHASQL QQQQLMDEIS SLSSPSCWTK EYNRLEDLKP TKLDDAFGSL DPSLLSPLKG 480 LSIESVTQTQ SQSRQNMNQL RASYPMNLSS SPVRKPSVFG FDSSAAVAAA VMNSRSSGFA 540 KRSQSFIDRG AMIGRAGLTT SANSKTMMSS NISDWSSPDG KLDWGIQGDE LNKLRKSVSF 600 GFRNNNPTTT ATTNMMPTDA DEPDVSWVHS LVKDAAPTEA RLHQQQRYSL GKGVRETLPP 660 WMEQMYIEQE QMVA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.186 | 0.0 | flower|seedling| flowering |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012462620.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 29-like | ||||
Refseq | XP_012462621.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 29-like | ||||
Swissprot | Q9XEE6 | 0.0 | C3H29_ARATH; Zinc finger CCCH domain-containing protein 29 | ||||
TrEMBL | A0A0D2V7Z7 | 0.0 | A0A0D2V7Z7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G017600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM877 | 26 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40140.2 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G017600.1 |
Entrez Gene | 105782432 |
Publications ? help Back to Top | |||
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