PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G016900.1 | ||||||||
Common Name | B456_013G016900, LOC105782705 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 173aa MW: 19291.9 Da PI: 6.9912 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.5 | 7.2e-41 | 11 | 109 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+l+r+C+++C++apyf + +pkkfanvhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i lq+++ ql+ Gorai.013G016900.1 11 SCAACKLLKRRCSPNCIFAPYFRSGEPKKFANVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIQLQ 101 6****************************************************************************************** PP DUF260 92 aelallke 99 ++lal+++ Gorai.013G016900.1 102 HDLALARA 109 ***99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.407 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.0E-40 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MRGHEPRSTS SCAACKLLKR RCSPNCIFAP YFRSGEPKKF ANVHKVFGAS NVSKILVEVP 60 EEQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRKMIQL QHDLALARAC LARYVATPSV 120 IVSSDDHHRV ITGPFDDFPV DCGVSFDSFN QNISYELNQE ANMYDFSQIP YV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-46 | 6 | 114 | 6 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-46 | 6 | 114 | 6 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012463079.1 | 1e-127 | PREDICTED: LOB domain-containing protein 21 | ||||
Swissprot | Q9SRL8 | 2e-64 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A0D2V7P1 | 1e-125 | A0A0D2V7P1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G016900.1 | 1e-126 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10255 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 8e-67 | LOB domain-containing protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G016900.1 |
Entrez Gene | 105782705 |
Publications ? help Back to Top | |||
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