PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G015100.1
Common NameB456_013G015100, LOC105782526
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 475aa    MW: 53829.2 Da    PI: 6.7469
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G015100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.25.5e-137454691374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL++cA++v++g+le+a+  L+++s+las dgd+mqR+aayf eALa r+++ +++l+kal++++ s   +see++++klf+e++P+l
  Gorai.013G015100.1  45 LIHLLVSCANHVAAGSLENANIGLEQISHLASTDGDTMQRIAAYFNEALAYRMLKAWPGLCKALNSTKIS--LVSEEIHVQKLFFELCPFL 133
                         689*************************************************************999998..7****************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         k++++++NqaI+ea+ege++vHiiDf+  +++QW++L+q++++Rpegpp+lRiTg+++    +ke l ++++rL++ A++ ++pf+fn+ v
  Gorai.013G015100.1 134 KLAYVITNQAIVEAMEGEKMVHIIDFNCFEPAQWINLFQTFNARPEGPPHLRITGLHE----QKEVLDHMARRLTEEAQKWDIPFQFNP-V 219
                         **********************************************************....9**************************.6 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll........................................................... 214
                         + +le+l+le+Lrvk+gEalaV++vlqlh+ll                                                           
  Gorai.013G015100.1 220 VCKLENLDLESLRVKTGEALAVSSVLQLHSLLvtddemhkwkvnspsmsktdrshrvlqmnqrtlgewlkkepvhayspssdlaspsplsp 310
                         888**********************************************************************************999664 PP

                GRAS 215 desvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
                             sl+   +  ++L +++ lsPk++v++eqe++ ++++++er++eal++y+alfd+le++++r+  er+kvE++l+g+ei+n++aceg 
  Gorai.013G015100.1 311 L---SLAPapKMGSFLTALRALSPKLIVITEQESNNSGSTLMERVMEALNFYAALFDCLESTVSRAPLERKKVEKMLFGEEIKNIIACEGV 398
                         2...3333335778***************************************************************************** PP

                GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         er+erhe+lekW  rle aGF+ vpls++ + qa +ll++ + dgy+++ee+g+lv++W++rpL+s+SaWr
  Gorai.013G015100.1 399 ERKERHEKLEKWILRLELAGFGRVPLSYHGMLQAGRLLQTNNYDGYKIKEENGCLVICWQERPLYSISAWR 469
                         **********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.89219449IPR005202Transcription factor GRAS
PfamPF035141.9E-13445469IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MVPEGQSFVT SSPLQFIPWM SFSPGLGSPF PWLRELKSEE RGLYLIHLLV SCANHVAAGS  60
LENANIGLEQ ISHLASTDGD TMQRIAAYFN EALAYRMLKA WPGLCKALNS TKISLVSEEI  120
HVQKLFFELC PFLKLAYVIT NQAIVEAMEG EKMVHIIDFN CFEPAQWINL FQTFNARPEG  180
PPHLRITGLH EQKEVLDHMA RRLTEEAQKW DIPFQFNPVV CKLENLDLES LRVKTGEALA  240
VSSVLQLHSL LVTDDEMHKW KVNSPSMSKT DRSHRVLQMN QRTLGEWLKK EPVHAYSPSS  300
DLASPSPLSP LSLAPAPKMG SFLTALRALS PKLIVITEQE SNNSGSTLME RVMEALNFYA  360
ALFDCLESTV SRAPLERKKV EKMLFGEEIK NIIACEGVER KERHEKLEKW ILRLELAGFG  420
RVPLSYHGML QAGRLLQTNN YDGYKIKEEN GCLVICWQER PLYSISAWRF RPYD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-40454694375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462772.10.0PREDICTED: scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A0D2S6J00.0A0A0D2S6J0_GOSRA; Uncharacterized protein
STRINGGorai.013G015100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  3. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  4. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]