PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G014500.4
Common NameB456_013G014500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 513aa    MW: 55986.6 Da    PI: 5.3328
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G014500.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07152173426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         ++C +far G+Ck G++C+F H+
  Gorai.013G014500.4 152 RPCLYFAR-GFCKNGNNCRFVHS 173
                         69******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.6E-4150174IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-5152173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5152173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-5152173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.216153175IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MDGYEATRIV FSRIQSLEPG NASRIMGLLL IQDHGDKEMI RLAFGPEALL HSVILKAKKE  60
LGLPINSSSS RLLGSNGVNL PFLSIPATNP SFTFTGMVDE FQLQDQLADA CGGNTDSIRF  120
PSYWGNTSFQ RSNNTMNDIL GADDPSSAFL WRPCLYFARG FCKNGNNCRF VHSGVGESAA  180
EGDTIVGSPN KFEMMDQCHE LLRSKSARQQ RLAAAAAAVG AAQIMGSGSF PYSPKSINLV  240
LQQPQNDAQR AALMMGDDMN KFNRSSPASR QIYLTFPADS TFREEDVSNY FRKQPQQQIE  300
NGTLTGLDSR DPFDVQLGTR MFYNNQDILR RRKLGDQTDL QQALELQNRR LMSLQLLDVK  360
KHSPNLYGQS LVLPQENSSS PVPATLVTAA EKQTSTGKET VSSEENGSEK ESPHCEDGNL  420
PESLEHNLPD SPFASPGKAS KEYLSFNNAV MEKDGTISAN NNWIPSTLLP ANNALDMSSF  480
NSFNCQIPRF SSGQGTIGMY TGTGGPTCPV GI*
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462123.10.0PREDICTED: zinc finger CCCH domain-containing protein 46-like
RefseqXP_012462124.10.0PREDICTED: zinc finger CCCH domain-containing protein 46-like
SwissprotQ9SV095e-63C3H46_ARATH; Zinc finger CCCH domain-containing protein 46
TrEMBLA0A0D2TT340.0A0A0D2TT34_GOSRA; Uncharacterized protein
STRINGGorai.013G014500.10.0(Gossypium raimondii)
Publications ? help Back to Top
  1. Schindler S, et al.
    Alternative splicing at NAGNAG acceptors in Arabidopsis thaliana SR and SR-related protein-coding genes.
    BMC Genomics, 2008. 9: p. 159
    [PMID:18402682]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]