PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G014500.4 | ||||||||
Common Name | B456_013G014500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 513aa MW: 55986.6 Da PI: 5.3328 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.1 | 1.3e-07 | 152 | 173 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +far G+Ck G++C+F H+ Gorai.013G014500.4 152 RPCLYFAR-GFCKNGNNCRFVHS 173 69******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 9.6E-4 | 150 | 174 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-5 | 152 | 173 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 152 | 173 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.4E-5 | 152 | 173 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.216 | 153 | 175 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence Send to blast |
MDGYEATRIV FSRIQSLEPG NASRIMGLLL IQDHGDKEMI RLAFGPEALL HSVILKAKKE 60 LGLPINSSSS RLLGSNGVNL PFLSIPATNP SFTFTGMVDE FQLQDQLADA CGGNTDSIRF 120 PSYWGNTSFQ RSNNTMNDIL GADDPSSAFL WRPCLYFARG FCKNGNNCRF VHSGVGESAA 180 EGDTIVGSPN KFEMMDQCHE LLRSKSARQQ RLAAAAAAVG AAQIMGSGSF PYSPKSINLV 240 LQQPQNDAQR AALMMGDDMN KFNRSSPASR QIYLTFPADS TFREEDVSNY FRKQPQQQIE 300 NGTLTGLDSR DPFDVQLGTR MFYNNQDILR RRKLGDQTDL QQALELQNRR LMSLQLLDVK 360 KHSPNLYGQS LVLPQENSSS PVPATLVTAA EKQTSTGKET VSSEENGSEK ESPHCEDGNL 420 PESLEHNLPD SPFASPGKAS KEYLSFNNAV MEKDGTISAN NNWIPSTLLP ANNALDMSSF 480 NSFNCQIPRF SSGQGTIGMY TGTGGPTCPV GI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012462123.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 46-like | ||||
Refseq | XP_012462124.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 46-like | ||||
Swissprot | Q9SV09 | 5e-63 | C3H46_ARATH; Zinc finger CCCH domain-containing protein 46 | ||||
TrEMBL | A0A0D2TT34 | 0.0 | A0A0D2TT34_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G014500.1 | 0.0 | (Gossypium raimondii) |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G014500.4 |
Publications ? help Back to Top | |||
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